PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539246.1_FGP005
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CPP
Protein Properties Length: 311aa    MW: 35276.5 Da    PI: 6.2424
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539246.1_FGP005genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR50.34.6e-16107143339
                TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                        ++gCnCkks+ClkkYC+C+++g+ Cs  C+CedC+N 
  KN539246.1_FGP005 107 RRGCNCKKSSCLKKYCDCYQDGTGCSLFCRCEDCRNP 143
                        589********************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5163415.981145IPR005172CRC domain
SMARTSM011141.7E-15105146IPR033467Tesmin/TSO1-like CXC domain
PfamPF036382.8E-11108142IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MEATPISVKP PSPAEGGGER GWERVQALRL QEVEMLEAFS VSYDSGKVYR HFSEKRGEEM  60
EMFGTMRFSQ LCASILSNIE AFAYAAIAHA LLVEEDAHHS SSSTPPRRGC NCKKSSCLKK  120
YCDCYQDGTG CSLFCRCEDC RNPFGKNEGI MAEESKRFLY TGADLDHSED EQDFIVERSP  180
RLQSPISKES SFQQTPPHIR ATNRDAHMFP QAISQWQPRS WHCSKRQSND RVIDDSGEYK  240
NSNHEWQLAK PEDSYSISRC VQILNGMAEL SQVEKSVAPD VFLQAGNREI FISLNGDVRA  300
LWLKRKIQNL T
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539246.1_FGP005
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1080530.0AK108053.1 Oryza sativa Japonica Group cDNA clone:002-137-H05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015640211.11e-162protein tesmin/TSO1-like CXC 3 isoform X1
TrEMBLA0A0E0HGR71e-161A0A0E0HGR7_ORYNI; Uncharacterized protein
TrEMBLA0A0E0PPS51e-161A0A0E0PPS5_ORYRU; Uncharacterized protein
STRINGORUFI05G23610.11e-161(Oryza rufipogon)
STRINGONIVA05G23180.11e-161(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101592937
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22760.17e-20Tesmin/TSO1-like CXC domain-containing protein