PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | KN539246.1_FGP005 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | CPP | ||||||||
Protein Properties | Length: 311aa MW: 35276.5 Da PI: 6.2424 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 50.3 | 4.6e-16 | 107 | 143 | 3 | 39 |
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++gCnCkks+ClkkYC+C+++g+ Cs C+CedC+N KN539246.1_FGP005 107 RRGCNCKKSSCLKKYCDCYQDGTGCSLFCRCEDCRNP 143 589********************************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51634 | 15.98 | 1 | 145 | IPR005172 | CRC domain |
SMART | SM01114 | 1.7E-15 | 105 | 146 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 2.8E-11 | 108 | 142 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 311 aa Download sequence Send to blast |
MEATPISVKP PSPAEGGGER GWERVQALRL QEVEMLEAFS VSYDSGKVYR HFSEKRGEEM 60 EMFGTMRFSQ LCASILSNIE AFAYAAIAHA LLVEEDAHHS SSSTPPRRGC NCKKSSCLKK 120 YCDCYQDGTG CSLFCRCEDC RNPFGKNEGI MAEESKRFLY TGADLDHSED EQDFIVERSP 180 RLQSPISKES SFQQTPPHIR ATNRDAHMFP QAISQWQPRS WHCSKRQSND RVIDDSGEYK 240 NSNHEWQLAK PEDSYSISRC VQILNGMAEL SQVEKSVAPD VFLQAGNREI FISLNGDVRA 300 LWLKRKIQNL T |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | KN539246.1_FGP005 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK108053 | 0.0 | AK108053.1 Oryza sativa Japonica Group cDNA clone:002-137-H05, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015640211.1 | 1e-162 | protein tesmin/TSO1-like CXC 3 isoform X1 | ||||
TrEMBL | A0A0E0HGR7 | 1e-161 | A0A0E0HGR7_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0PPS5 | 1e-161 | A0A0E0PPS5_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI05G23610.1 | 1e-161 | (Oryza rufipogon) | ||||
STRING | ONIVA05G23180.1 | 1e-161 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10159 | 29 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G22760.1 | 7e-20 | Tesmin/TSO1-like CXC domain-containing protein |