PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN539245.1_FGP012 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bZIP | ||||||||
Protein Properties | Length: 133aa MW: 14673.8 Da PI: 9.4629 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 24.9 | 4.5e-08 | 21 | 63 | 21 | 63 |
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 21 RqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 R RKk+++ e ++ v +L aeN++L++e+ +l+ +a+l +e+ KN539245.1_FGP012 21 RPRKKMRLPEVQQLVRSLAAENDSLREEMRTLQRACAALSKEN 63 89*************************************9997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 5.5E-5 | 21 | 60 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 133 aa Download sequence Send to blast |
MGRQQQLPCL APSPLRPAGQ RPRKKMRLPE VQQLVRSLAA ENDSLREEMR TLQRACAALS 60 KENDKLEFFP NLASGPVMIR LEISSSRNKP MITDDLKGKQ QIDQQSATQS IGGGFALPDL 120 NIPVQDVADG SVH |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 20 | 26 | RPRKKMR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN539245.1_FGP012 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK107630 | 2e-91 | AK107630.1 Oryza sativa Japonica Group cDNA clone:002-131-E03, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015626239.1 | 2e-72 | uncharacterized protein LOC4328519 isoform X1 | ||||
TrEMBL | A0A0E0CGS0 | 5e-74 | A0A0E0CGS0_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI02G07100.1 | 9e-75 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3790 | 29 | 51 |