PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN539243.1_FGP003 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 152aa MW: 17555 Da PI: 5.0373 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 59.9 | 8.7e-19 | 11 | 136 | 3 | 127 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpkkvka.eekew..yfFskrdkkyatgkrknratksgyWkatgkdk 90 +G rF P+d el+ L +k++g++ ++e ++++++i++++P +L +++++ ee+e yfFs+ + + k +ra++ g+Wk + KN539243.1_FGP003 11 VGARFLPKDLELL-AILDAKLRGSPlGPVEAIFHDTQILDFHPYKLYEMYAEdEEEEGyiYFFSTMQFRC--RKIVERAAQGGRWKVNNC-E 98 79***********.78*********54555569*************743333133333347777776665..57899*********7655.3 PP NAM 91 evlskkgelvglkktLvfyk..grapkgektdWvmheyr 127 ++ + +g +vg k t+ fy+ g +++ t+W m+e++ KN539243.1_FGP003 99 TLEV-GGVAVGRKFTMNFYEhiGGDNDLIWTNWGMQEFA 136 4444.89************5336788889********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.18E-24 | 6 | 142 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 18.822 | 9 | 152 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-10 | 11 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 152 aa Download sequence Send to blast |
MAAPEGQNKF VGARFLPKDL ELLAILDAKL RGSPLGPVEA IFHDTQILDF HPYKLYEMYA 60 EDEEEEGYIY FFSTMQFRCR KIVERAAQGG RWKVNNCETL EVGGVAVGRK FTMNFYEHIG 120 GDNDLIWTNW GMQEFARIIG PNKEVFHSEI HF |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN539243.1_FGP003 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC027660 | 1e-162 | AC027660.2 Oryza sativa Japonica Group chromosome 10 clone BAC nbxb0045B21, complete sequence. | |||
GenBank | AP014966 | 1e-162 | AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012618 | 1e-162 | CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025876515.1 | 7e-98 | uncharacterized protein LOC4348617 | ||||
TrEMBL | A0A0E0IS19 | 1e-96 | A0A0E0IS19_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA10G09240.1 | 2e-97 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP19206 | 9 | 9 |