PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN539238.1_FGP005 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | WRKY | ||||||||
Protein Properties | Length: 197aa MW: 21294.9 Da PI: 8.857 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 59.5 | 6.6e-19 | 125 | 164 | 1 | 37 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEE CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkk 37 +dDg++WrKYGqKe+ g+++pr+YYrCt++ gC+++k+ KN539238.1_FGP005 125 VDDGHSWRKYGQKEILGAKHPRGYYRCTHRnsqGCMATKQ 164 59***************************98889***998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.8E-18 | 114 | 164 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 17.006 | 120 | 164 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.45E-17 | 121 | 165 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.7E-20 | 125 | 175 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.8E-17 | 126 | 164 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0048527 | Biological Process | lateral root development | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0000987 | Molecular Function | core promoter proximal region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MESMEGNGGG RLVVTELSHI KELVRQLEGH LGGSGSPDLC KHLASQIFSV TERSIGMIRS 60 GHFDGHRKRS AAAVAAGDLD SATPSPLSDV SDLPFKATKK RKTSTEKKRH QIRVSSTGGV 120 ENPPVDDGHS WRKYGQKEIL GAKHPRGYYR CTHRNSQGCM ATKQPAPASA MVDADLSALD 180 AFEFDPGFTI DITSFFA |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00112 | ampDAP | Transfer from AT2G46400 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN539238.1_FGP005 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK065265 | 0.0 | AK065265.1 Oryza sativa Japonica Group cDNA clone:J013002K14, full insert sequence. | |||
GenBank | AY676930 | 0.0 | AY676930.1 Oryza sativa (indica cultivar-group) transcription factor WRKY74 (WRKY74) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015651250.1 | 1e-116 | probable WRKY transcription factor 30 | ||||
TrEMBL | A0A0D3H5G3 | 1e-117 | A0A0D3H5G3_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM09G06630.1 | 1e-116 | (Oryza glumipatula) | ||||
STRING | OMERI09G04420.1 | 1e-116 | (Oryza meridionalis) | ||||
STRING | OBART09G06020.1 | 1e-116 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1086 | 38 | 131 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46400.1 | 4e-24 | WRKY DNA-binding protein 46 |