PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539228.1_FGP007
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 506aa    MW: 55205 Da    PI: 8.4922
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539228.1_FGP007genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox31.72.5e-102263256
                       HHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox 32 eLAkklgLterqVkvWFqNrRakek 56
                       eL+++l+L+ rqVk+WFqNrR+++k
  KN539228.1_FGP007  2 ELSRRLNLESRQVKFWFQNRRTQMK 26
                       89********************999 PP
2START1181.3e-37862756167
                        HHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEE CS
              START   6 aaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlev 84 
                        + +el + a+ +ep+W  s     e +n+de+ + f++  +     + +ea r+sg+ +  +++lv +l+d + +W+e+++    +a+t++ 
  KN539228.1_FGP007  86 LKDELDRVAQMDEPLWLPSLdggfETLNYDEYHRAFARVLGqcpagYVSEATRESGIAIISSVDLVDSLMDAP-RWSEMFPcvvaRASTTDI 176
                        667788889***************************8866699******************************.****************** PP

                        ECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..........-TTSEE-EESSEEEEEEEECTC CS
              START  85 issg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.........sssvvRaellpSgiliepksng 160
                        issg      g +qlm aelq+lsplvp R++vf+R+++q+ +g w++vdvSvd    p +         sss++ ++llp+g++++++ ng
  KN539228.1_FGP007 177 ISSGmggtrsGSIQLMHAELQVLSPLVPiREVVFLRFCKQHAEGLWAVVDVSVDAVLRPDQnggggssssSSSYMGCRLLPTGCIVQDMNNG 268
                        ******************************************************988776556667777899******************** PP

                        EEEEEEE CS
              START 161 hskvtwv 167
                        +skv+++
  KN539228.1_FGP007 269 YSKVIVL 275
                        ****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.9E-9135IPR009057Homeodomain-like
PROSITE profilePS5007112.276128IPR001356Homeobox domain
CDDcd000862.65E-6228No hitNo description
PfamPF000461.0E-7226IPR001356Homeobox domain
SuperFamilySSF466898.77E-8232IPR009057Homeodomain-like
PROSITE patternPS000270326IPR017970Homeobox, conserved site
SMARTSM002341.1E-1681315IPR002913START domain
PfamPF018521.9E-2985275IPR002913START domain
SuperFamilySSF559612.2E-1987276No hitNo description
PROSITE profilePS5084824.16288275IPR002913START domain
CDDcd088759.70E-7188274No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    Send to blast
MELSRRLNLE SRQVKFWFQN RRTQMKTQIE RHENALLRQE NDKLRAENMT IREAMRNPMC  60
ASCGGAAVLG EVSLEEQHLR IENARLKDEL DRVAQMDEPL WLPSLDGGFE TLNYDEYHRA  120
FARVLGQCPA GYVSEATRES GIAIISSVDL VDSLMDAPRW SEMFPCVVAR ASTTDIISSG  180
MGGTRSGSIQ LMHAELQVLS PLVPIREVVF LRFCKQHAEG LWAVVDVSVD AVLRPDQNGG  240
GGSSSSSSSY MGCRLLPTGC IVQDMNNGYS KVIVLVLRHG GFLWSRRWRV PRVGAGGAGR  300
DVLPRRRRGG AAAAEEAVAG GRVGGCGGGL RPITPVGRRS MLKLAQRMTD NFCAGVCASA  360
AQKWRRLDEW RGEGGGGGGG DGEDKVRMMA RHSVGAPGEP PGVVLSATTS VRLPGTLPQR  420
VFDYLRDEQR RGDWDILANG EAMQEMDHIA KGQHHGNAVS LLRPNILVNN LPTAKLTVES  480
VDTVSNLLSC TIQKIKSALQ ASIISP
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539228.1_FGP007
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0056810.0AP005681.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1439_F07.
GenBankAP0058640.0AP005864.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OSJNBa0047P18.
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612621.10.0homeobox-leucine zipper protein ROC6
SwissprotQ7Y0V70.0ROC6_ORYSJ; Homeobox-leucine zipper protein ROC6
TrEMBLA0A0E0M3M50.0A0A0E0M3M5_ORYPU; Uncharacterized protein
STRINGOPUNC09G15430.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP120337116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52170.13e-99homeodomain GLABROUS 7