PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539227.1_FGP008
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 623aa    MW: 67362.1 Da    PI: 6.1393
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539227.1_FGP008genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.27.3e-33423481159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+++d k v++tYeg+Hnhe
  KN539227.1_FGP008 423 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHQGCSVRKHVERASHDLKSVITTYEGKHNHE 481
                        59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.8E-37408483IPR003657WRKY domain
SuperFamilySSF1182905.62E-29415483IPR003657WRKY domain
PROSITE profilePS5081137.883418483IPR003657WRKY domain
SMARTSM007743.3E-38423482IPR003657WRKY domain
PfamPF031062.4E-25424481IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 623 aa     Download sequence    Send to blast
MEDWMPPPTP SPRTLMSSFL NEDFVSGSFS NIFSDHESNK PQDQFERSRE LVDLSKEVPS  60
QSARPAFQRD ASLDHSLVSP TQRSNSHGGL AERRAARAGF SVPKIDTSRG GSSTVIRSPV  120
AIPPGLSPTT LLESPVFLYN AMAQPSPTTG TLPFLMASNA KSTILSATKM DEDCTFGNDT  180
FSFQPHVGSR RPNFSAAEKG PNACHQNQSL SNIHQRESSL QSSFTAVKDI TDEKNIKTKT  240
SDSMFGDNHS SDEQDDETNQ NGEYSMPPPN HRSGVPLSHT NDPEVNVLEN RGSQTCHNSA  300
SLWDNAKNDC LQDVQSEVIE TRTAACLPVS TNCDTSIMES QDAVDVSSTL SNEEDDRATH  360
GTASIECNRD GDETDSKRRK LDALTAATAA ITTTSNIDMG AAASRGVREP RVVVQTTSEV  420
DILDDGYRWR KYGQKVVKGN PNPRSYYKCT HQGCSVRKHV ERASHDLKSV ITTYEGKHNH  480
EVPAARNSGH GSSGSGNAPS APQSNGSQRR QEQGQASFGQ FGGAAPFSSF VLPPRNQFGP  540
SASNFPFGMV PPGMAIPMPS LGSLATAKMA GHPSTMQGYQ GLMIPEGEMK TEPMSQLGFT  600
AVNQSSSSFQ QMMNRPPSFG PQM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-33414484878Probable WRKY transcription factor 4
2lex_A1e-33414484878Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539227.1_FGP008
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0650780.0AK065078.1 Oryza sativa Japonica Group cDNA clone:J013001K23, full insert sequence.
GenBankAK1037450.0AK103745.1 Oryza sativa Japonica Group cDNA clone:J033138N11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612220.10.0probable WRKY transcription factor 2
RefseqXP_015612221.10.0probable WRKY transcription factor 2
TrEMBLA0A0E0ETB30.0A0A0E0ETB3_9ORYZ; Uncharacterized protein
STRINGOMERI09G10820.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123382233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26440.12e-54WRKY DNA-binding protein 34