PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN539221.1_FGP001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ARF | ||||||||
Protein Properties | Length: 618aa MW: 67392.6 Da PI: 6.4122 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 74.1 | 1.6e-23 | 43 | 144 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f k+lt+sd+++ g +++p+ +ae++ ++++ + + +d +g W++++iyr++++r++lt+GW+ Fv+ ++L +gD++vF+ KN539221.1_FGP001 43 FAKTLTQSDANNGGGFSVPRFCAETIfpeldysSEPPVQ--SVCAKDVHGVDWTFRHIYRGTPRRHLLTTGWSPFVNKKQLTAGDSIVFM-- 130 89*********************999****987656666..5************************************************.. PP SSSEE..EEEEE-S CS B3 86 grsefelvvkvfrk 99 ++++++ +v+++r+ KN539221.1_FGP001 131 RDEGGNIHVGLRRA 144 5699*******996 PP | |||||||
2 | Auxin_resp | 118.2 | 6.7e-39 | 199 | 282 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa++a+++++Fev+Y+Prast+eF+v+++ v++a+ v++++GmRfkmafetedss++++ +Gtv+gv+++dpvrWp+S+Wr+L+ KN539221.1_FGP001 199 AATRATSGQPFEVLYYPRASTPEFCVRAAAVRTAMAVQWCPGMRFKMAFETEDSSRISWfMGTVAGVQASDPVRWPQSPWRLLQ 282 68899*****************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 8.8E-36 | 36 | 146 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.05E-28 | 39 | 145 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.25E-18 | 42 | 143 | No hit | No description |
PROSITE profile | PS50863 | 12.294 | 43 | 145 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 8.8E-20 | 43 | 145 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.3E-21 | 43 | 144 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 3.5E-33 | 199 | 282 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 18.843 | 532 | 612 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 618 aa Download sequence Send to blast |
MADPDTDEVF ARIRLVPLRA AEDGDVEDDG AAAGEEHEKP ASFAKTLTQS DANNGGGFSV 60 PRFCAETIFP ELDYSSEPPV QSVCAKDVHG VDWTFRHIYR GTPRRHLLTT GWSPFVNKKQ 120 LTAGDSIVFM RDEGGNIHVG LRRAKRGFCS IGGDDESLSS MPGWDQYRGL MRRNNATATA 180 TGGRTPPKGK VPPENVLTAA TRATSGQPFE VLYYPRASTP EFCVRAAAVR TAMAVQWCPG 240 MRFKMAFETE DSSRISWFMG TVAGVQASDP VRWPQSPWRL LQVTWDEPEL LQNVKRVCPW 300 LVELVSSMPN LHLPSFSPPR KKPRNPPYAE LPLEGQIFTG PVFPPNPMAH DHHHHHGFPF 360 LPFPDSSAQP AGIQGARHAQ FASPFPEFHI GNLQPNLMLY AGIRLPPADR AAPAPRPPRI 420 IISTDLTIGS PGKPDDAACS PSSGGKKIDD TKPRGFLLFG QAILTEEQIK NGNSDGRPAS 480 PNWDAEKAPN TSEGSDSGVT QGSPTKNTTP SWSLPYFGGN NISRASEYEL NPGQCKVFVE 540 SEAVGRSLDL SALSSFEELY ACLSDMFSIG SDELRSHLVY RSPAGEVKHA GDEPFCSFVK 600 SARKLRILTD AGSDNLGD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 2e-66 | 2 | 303 | 117 | 388 | Auxin response factor 5 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN539221.1_FGP001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK100795 | 0.0 | AK100795.1 Oryza sativa Japonica Group cDNA clone:J023121F07, full insert sequence. | |||
GenBank | AL662958 | 0.0 | AL662958.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0019D11, complete sequence. | |||
GenBank | AL731629 | 0.0 | AL731629.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0061C13, complete sequence. | |||
GenBank | AP014960 | 0.0 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012612 | 0.0 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015633845.1 | 0.0 | auxin response factor 10 | ||||
Swissprot | Q01I35 | 0.0 | ARFJ_ORYSI; Auxin response factor 10 | ||||
Swissprot | Q7XKK6 | 0.0 | ARFJ_ORYSJ; Auxin response factor 10 | ||||
TrEMBL | A0A0D9Y8Q9 | 0.0 | A0A0D9Y8Q9_9ORYZ; Auxin response factor | ||||
STRING | OGLUM01G18360.1 | 0.0 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP516 | 37 | 152 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28350.1 | 1e-162 | auxin response factor 10 |