PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN539219.1_FGP007 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ARF | ||||||||
Protein Properties | Length: 523aa MW: 56856.6 Da PI: 7.652 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 58.4 | 1.3e-18 | 20 | 83 | 34 | 99 |
SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 34 ktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +t+ +d +g +W++++iyr++++r++lt+GW+ Fv++++L +gD++vF +++ +el+v+++r+ KN539219.1_FGP007 20 QTVLAKDVHGVVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFL--RTRHGELCVGIRRA 83 379999********************************************..4479999*****97 PP | |||||||
2 | Auxin_resp | 116.4 | 2.5e-38 | 144 | 227 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ as++ +Fev Y+Prast+eFvvk+++v++a++++++ GmRfkmafetedss++++ +Gt+++v+ +dp rWpnS+Wr+L+ KN539219.1_FGP007 144 AASLASSGLPFEVAYYPRASTPEFVVKAASVQAAMRIQWCSGMRFKMAFETEDSSRISWfMGTISSVQVADPNRWPNSPWRLLQ 227 68899*****************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 11.801 | 1 | 84 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.1E-6 | 3 | 84 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.0E-23 | 9 | 85 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.31E-18 | 10 | 85 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.61E-14 | 20 | 82 | No hit | No description |
Pfam | PF02362 | 1.3E-16 | 20 | 83 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.3E-33 | 144 | 227 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 16.706 | 459 | 523 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 523 aa Download sequence Send to blast |
MKEVGEVEEE LDYRADPPVQ TVLAKDVHGV VWKFRHIYRG TPRRHLLTTG WSTFVNQKKL 60 VAGDSIVFLR TRHGELCVGI RRAKRVACGG MECMSGWNAP GYGGGGGFSA FLKEEENKLM 120 KGHGGGGGYM KGKGKVRMAD VVEAASLASS GLPFEVAYYP RASTPEFVVK AASVQAAMRI 180 QWCSGMRFKM AFETEDSSRI SWFMGTISSV QVADPNRWPN SPWRLLQVTW DEPDLLQNVK 240 CVSPWLVELV SSIPPIHLGP FSSPRKKLRV PPHPDFPFEG HLLNPIFHGN PLGPSNSPLC 300 CYPDTAPAGI QGARHAQFGL PLTDHQLNKL HLGLLHSGSF NRLDAITPPS RISKGFVVSS 360 APAHDNVSCL LSIGTPQVAE KSDDRKTTPH IMLFGKAIFT EQQITSSGST ETLSPGVTGN 420 SSPNGNAHKT GNASDGSGSS ICIGFSSQGH EASDLGLEAG HCKVFMESED VGRTIDLSVF 480 GSYEELYGRL ADMFGIEKEE IINHLHFRDA AGVVKHPGEV PFR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 2e-42 | 11 | 252 | 187 | 392 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN539219.1_FGP007 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK318617 | 0.0 | AK318617.1 Oryza sativa Japonica Group cDNA, clone: J100090H20, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015614842.1 | 0.0 | auxin response factor 22 | ||||
Swissprot | Q9AV47 | 0.0 | ARFV_ORYSJ; Auxin response factor 22 | ||||
TrEMBL | A0A0E0R0F8 | 0.0 | A0A0E0R0F8_ORYRU; Auxin response factor | ||||
STRING | ORUFI10G14150.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP516 | 37 | 152 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30080.1 | 1e-171 | auxin response factor 16 |
Publications ? help Back to Top | |||
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