PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539214.1_FGP008
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 373aa    MW: 41201.3 Da    PI: 7.1783
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539214.1_FGP008genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.26.3e-32103159259
                        --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        dDgynWrKYGqK+vkgs++prsYY+Ct+++Cpvkkkve+++ d+++ ei+Y+g+Hnh+
  KN539214.1_FGP008 103 DDGYNWRKYGQKVVKGSDCPRSYYKCTHPNCPVKKKVEHAE-DGQISEIIYKGKHNHQ 159
                        8**************************************99.***************8 PP

2WRKY107.75.9e-34259317159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        ldDg++WrKYGqK+vkg+++prsYY+Ct+agC+v+k++er+++dpk+v++tYeg+Hnhe
  KN539214.1_FGP008 259 LDDGFRWRKYGQKVVKGNPHPRSYYKCTYAGCNVRKHIERASSDPKAVITTYEGKHNHE 317
                        59********************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.8E-2999161IPR003657WRKY domain
SuperFamilySSF1182901.57E-25101161IPR003657WRKY domain
SMARTSM007742.5E-34102160IPR003657WRKY domain
PROSITE profilePS5081123.192103161IPR003657WRKY domain
PfamPF031069.7E-25103159IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.4E-36245319IPR003657WRKY domain
SuperFamilySSF1182902.35E-29251319IPR003657WRKY domain
PROSITE profilePS5081136.977254319IPR003657WRKY domain
SMARTSM007746.3E-40259318IPR003657WRKY domain
PfamPF031062.2E-26260317IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MLDIYFVKTS PEGGFGMSHR EALAQVTAQA SHSPLRMFDH TEQPSFSAAP TSSEAMQHMN  60
AAVNMTGISD MVMGPTNNEN VAFQPAEASQ RYQVNAPVDK PADDGYNWRK YGQKVVKGSD  120
CPRSYYKCTH PNCPVKKKVE HAEDGQISEI IYKGKHNHQR PPNKRAKDGS SSAADQNEQS  180
NDTTSGLSGI KRDQEAIYGM SEQLSGLSEG DDMDDGESRP HEADDKESDS KKRNIQISSQ  240
RTSAEAKIIV QTTSEVDLLD DGFRWRKYGQ KVVKGNPHPR SYYKCTYAGC NVRKHIERAS  300
SDPKAVITTY EGKHNHEPPV GRGNNQNAGN AAPSSSARQN MQNLSSNQAS LTMADFNNIN  360
QRPIGVLQFK SEE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-39103319877Probable WRKY transcription factor 4
2lex_A3e-39103319877Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00260DAPTransfer from AT2G03340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539214.1_FGP008
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL7317590.0AL731759.2 Oryza sativa chromosome 12, . BAC OSJNBa0009K11 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620542.10.0probable WRKY transcription factor 3
TrEMBLA0A0D3HUW20.0A0A0D3HUW2_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0BT580.0A0A0E0BT58_9ORYZ; Uncharacterized protein
STRINGOGLUM12G14890.10.0(Oryza glumipatula)
STRINGOBART12G13250.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134538122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-105WRKY DNA-binding protein 3