PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN539214.1_FGP008 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | WRKY | ||||||||
Protein Properties | Length: 373aa MW: 41201.3 Da PI: 7.1783 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 101.2 | 6.3e-32 | 103 | 159 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 dDgynWrKYGqK+vkgs++prsYY+Ct+++Cpvkkkve+++ d+++ ei+Y+g+Hnh+ KN539214.1_FGP008 103 DDGYNWRKYGQKVVKGSDCPRSYYKCTHPNCPVKKKVEHAE-DGQISEIIYKGKHNHQ 159 8**************************************99.***************8 PP | |||||||
2 | WRKY | 107.7 | 5.9e-34 | 259 | 317 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYGqK+vkg+++prsYY+Ct+agC+v+k++er+++dpk+v++tYeg+Hnhe KN539214.1_FGP008 259 LDDGFRWRKYGQKVVKGNPHPRSYYKCTYAGCNVRKHIERASSDPKAVITTYEGKHNHE 317 59********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 9.8E-29 | 99 | 161 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.57E-25 | 101 | 161 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.5E-34 | 102 | 160 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 23.192 | 103 | 161 | IPR003657 | WRKY domain |
Pfam | PF03106 | 9.7E-25 | 103 | 159 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.4E-36 | 245 | 319 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.35E-29 | 251 | 319 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 36.977 | 254 | 319 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.3E-40 | 259 | 318 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.2E-26 | 260 | 317 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 373 aa Download sequence Send to blast |
MLDIYFVKTS PEGGFGMSHR EALAQVTAQA SHSPLRMFDH TEQPSFSAAP TSSEAMQHMN 60 AAVNMTGISD MVMGPTNNEN VAFQPAEASQ RYQVNAPVDK PADDGYNWRK YGQKVVKGSD 120 CPRSYYKCTH PNCPVKKKVE HAEDGQISEI IYKGKHNHQR PPNKRAKDGS SSAADQNEQS 180 NDTTSGLSGI KRDQEAIYGM SEQLSGLSEG DDMDDGESRP HEADDKESDS KKRNIQISSQ 240 RTSAEAKIIV QTTSEVDLLD DGFRWRKYGQ KVVKGNPHPR SYYKCTYAGC NVRKHIERAS 300 SDPKAVITTY EGKHNHEPPV GRGNNQNAGN AAPSSSARQN MQNLSSNQAS LTMADFNNIN 360 QRPIGVLQFK SEE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 3e-39 | 103 | 319 | 8 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 3e-39 | 103 | 319 | 8 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00260 | DAP | Transfer from AT2G03340 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN539214.1_FGP008 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL731759 | 0.0 | AL731759.2 Oryza sativa chromosome 12, . BAC OSJNBa0009K11 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. | |||
GenBank | AP014968 | 0.0 | AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015620542.1 | 0.0 | probable WRKY transcription factor 3 | ||||
TrEMBL | A0A0D3HUW2 | 0.0 | A0A0D3HUW2_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0BT58 | 0.0 | A0A0E0BT58_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM12G14890.1 | 0.0 | (Oryza glumipatula) | ||||
STRING | OBART12G13250.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1345 | 38 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03340.1 | 1e-105 | WRKY DNA-binding protein 3 |