PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539196.1_FGP010
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HSF
Protein Properties Length: 394aa    MW: 44640.1 Da    PI: 4.6412
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539196.1_FGP010genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.23.1e-34511422102
                        HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
       HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 
                        Fl+k+y+++ed++++ ++sws+ gnsfvv+d++ fa+ +Lp+ Fkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+++l
  KN539196.1_FGP010  51 FLTKTYDLVEDPATDGVVSWSRAGNSFVVWDPHVFADLLLPRLFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQRHL 133
                        9****************************************************************999.........*************** PP

                        XXXXXXXXX CS
       HSF_DNA-bind  94 lekikrkks 102
                        l++ikr+k 
  KN539196.1_FGP010 134 LKTIKRRKP 142
                        ******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.16E-3547140IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.8E-3847140IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.1E-6147140IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.4E-195174IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.4E-3151140IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.4E-1989101IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434090114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.4E-19102114IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MDPAAAVGIV KEEMLETQHQ QQQRQEDGGG GGGVAAPRPM EGLHEVGPPP FLTKTYDLVE  60
DPATDGVVSW SRAGNSFVVW DPHVFADLLL PRLFKHNNFS SFVRQLNTYG FRKVDPDRWE  120
FANEGFLRGQ RHLLKTIKRR KPPSNAPPSQ QQSLTSCLEV GEFGFEEEID RLKRDKNILI  180
TEVVKLRQEQ QATKDHVKAM EDRLRAAEQK QVQMMGFLAR AMRNPEFFQQ LAQQKEKRKE  240
LEDAISKKRR RPIDNVPFYD PGETSQTEQL DSPYLFDSGV LNELSEPGIP ELENLAVNIQ  300
DLGKGKVDEE RQNQANGQAE LGDDFWAELL VEDFTGKEEQ SELDGKIDGI DELAQQLGLL  360
LASEFALLLV KQIQLTSGNM TDYGRFPLTE IHDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A7e-264914018120Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1133139LKTIKRR
2236250KRKELEDAISKKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000269|PubMed:16202242}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539196.1_FGP010
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:16202242}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3444880.0AY344488.1 Oryza sativa (japonica cultivar-group) heat shock factor RHSF6 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025876421.10.0heat stress transcription factor A-2c-like
SwissprotQ338B00.0HFA2C_ORYSJ; Heat stress transcription factor A-2c
TrEMBLA0A0E0QZ680.0A0A0E0QZ68_ORYRU; Uncharacterized protein
STRINGORUFI10G10710.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-111heat shock transcription factor A6B
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Singh A, et al.
    OsHsfA2c and OsHsfB4b are involved in the transcriptional regulation of cytoplasmic OsClpB (Hsp100) gene in rice (Oryza sativa L.).
    Cell Stress Chaperones, 2012. 17(2): p. 243-54
    [PMID:22147560]