PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN539195.1_FGP013 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GATA | ||||||||
Protein Properties | Length: 257aa MW: 27998.8 Da PI: 8.6634 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 47.9 | 1.9e-15 | 152 | 188 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C+nCg ++ Tp +Rrgp g+++LCnaCGl+++ kg+ KN539195.1_FGP013 152 CQNCGISSrlTPAMRRGPAGPRSLCNACGLMWANKGT 188 **********************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF06203 | 5.1E-16 | 81 | 121 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 13.493 | 81 | 123 | IPR010402 | CCT domain |
SMART | SM00401 | 6.0E-10 | 146 | 200 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 7.3E-14 | 150 | 190 | IPR013088 | Zinc finger, NHR/GATA-type |
SuperFamily | SSF57716 | 1.95E-10 | 150 | 200 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 152 | 179 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 6.28E-13 | 152 | 198 | No hit | No description |
Pfam | PF00320 | 3.5E-13 | 152 | 188 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MDPTTPVLVA ADLATPLLTT TNPAERRRDG VCGRVPIFGE FENRVQAVLL VLGGSDMPPG 60 LVSMAVPTTF DEKSTTVAAR RVASLMRFRE KRKERCFDKK IRYSVRKEVA QKMKRRKGQF 120 AGRADFGDGS CSSAPCGSTA NGEDDHIRET HCQNCGISSR LTPAMRRGPA GPRSLCNACG 180 LMWANKGTLR SPLNAPKMTV QHPADLSKTG DTDDSKANLC AEHNQTTMKT DTEMVPEQEQ 240 KADVLPPTKE EDSMATS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN539195.1_FGP013 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269|PubMed:19618278}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK288076 | 0.0 | AK288076.1 Oryza sativa Japonica Group cDNA, clone: J075163P08, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015632019.1 | 1e-158 | GATA transcription factor 19 isoform X1 | ||||
Swissprot | Q0DNU1 | 1e-159 | GAT19_ORYSJ; GATA transcription factor 19 | ||||
TrEMBL | A0A0E0GTG6 | 1e-156 | A0A0E0GTG6_ORYNI; Uncharacterized protein | ||||
STRING | OS03T0734900-00 | 1e-157 | (Oryza sativa) | ||||
STRING | ONIVA03G34920.1 | 1e-157 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3460 | 37 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51600.2 | 3e-44 | ZIM-LIKE 2 |