PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN539187.1_FGP008 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | AP2 | ||||||||
Protein Properties | Length: 173aa MW: 20087.4 Da PI: 10.7166 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 42 | 2.4e-13 | 35 | 91 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g rk + g ++ +e+Aa+a++ a++k++g KN539187.1_FGP008 35 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqTRKGRQ-GGYDMEEKAARAYDLAALKYWG 91 78*******************77776664346655.77******************98 PP | |||||||
2 | AP2 | 26.4 | 1.7e-08 | 136 | 168 | 3 | 38 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgt 38 y+GV+++++ grW A+I +s +k +lg+f t KN539187.1_FGP008 136 YRGVTRHHQHGRWQARIGRVSG---NKDLYLGTFST 168 9***************999754...4********87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.4E-10 | 35 | 91 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.55E-15 | 35 | 100 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 6.25E-17 | 35 | 99 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.5E-13 | 36 | 100 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.3E-23 | 36 | 105 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.359 | 36 | 99 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.2E-6 | 37 | 48 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.2E-6 | 81 | 101 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.81E-7 | 134 | 169 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.9E-6 | 135 | 169 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 10.586 | 135 | 173 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 0.0024 | 135 | 173 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.3E-4 | 136 | 168 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
MAMDAVSKKR GGADRGGQKQ PVHRKSIDTF GQRTSQYRGV TRHRWTGRYE AHLWDNSCKK 60 EGQTRKGRQG GYDMEEKAAR AYDLAALKYW GPSTHINFPL EDYQEELEEM KNMTRQEYVA 120 HLRRKSSGFS RGASMYRGVT RHHQHGRWQA RIGRVSGNKD LYLGTFSTNH HRS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN539187.1_FGP008 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK109848 | 1e-160 | AK109848.1 Oryza sativa Japonica Group cDNA clone:002-148-F05, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025879550.1 | 1e-116 | AP2-like ethylene-responsive transcription factor CRL5 isoform X2 | ||||
Swissprot | Q84Z02 | 1e-104 | CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5 | ||||
TrEMBL | A0A0D3FPK4 | 1e-116 | A0A0D3FPK4_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0D9ZDQ4 | 1e-116 | A0A0D9ZDQ4_9ORYZ; Uncharacterized protein | ||||
TrEMBL | B9F5X0 | 1e-116 | B9F5X0_ORYSJ; Uncharacterized protein | ||||
STRING | OGLUM03G35380.1 | 1e-117 | (Oryza glumipatula) | ||||
STRING | OBART03G35620.1 | 1e-117 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP948 | 38 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37750.1 | 1e-100 | AP2 family protein |
Publications ? help Back to Top | |||
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