PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN539176.1_FGP009 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 193aa MW: 20752.5 Da PI: 4.7737 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32.8 | 1.2e-10 | 104 | 134 | 1 | 34 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...T CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskap 34 +rr+h ++Er+RR+++N+ ++ Lr+l+P++ + KN539176.1_FGP009 104 QRRNHIAVERNRRRQMNEYLAVLRSLMPPS---Y 134 79**************************97...3 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 4.36E-9 | 97 | 137 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.25E-8 | 102 | 137 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.8E-9 | 102 | 134 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 11.598 | 103 | 162 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.9E-8 | 104 | 133 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MALEAVVFPQ EHLSCAAAMY AAPPSSLGCG VDMDEFEENG GVVLQEEAGA AVHGGGGGGA 60 GGMMSVWVNA ATCARSIAAS GAVEEFWDER KYPVVKNKEE AESQRRNHIA VERNRRRQMN 120 EYLAVLRSLM PPSYAQRCLG LTVLHLNVTT TADHLALYSF SLKMEDECRL SSVDEIAAAV 180 NQMVTKIAGE CIS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 105 | 115 | RNHIAVERNRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN539176.1_FGP009 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004814 | 1e-146 | AP004814.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0471A11. | |||
GenBank | AP014958 | 1e-146 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012610 | 1e-146 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015688739.1 | 6e-96 | PREDICTED: LOW QUALITY PROTEIN: transcription factor bHLH57-like | ||||
TrEMBL | A0A0D3FAR1 | 5e-73 | A0A0D3FAR1_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0D9YYG5 | 5e-73 | A0A0D9YYG5_9ORYZ; Uncharacterized protein | ||||
TrEMBL | I1P4G7 | 5e-73 | I1P4G7_ORYGL; Uncharacterized protein | ||||
STRING | OGLUM02G33770.1 | 8e-74 | (Oryza glumipatula) | ||||
STRING | ORGLA02G0287300.1 | 8e-74 | (Oryza glaberrima) | ||||
STRING | OBART02G33270.1 | 8e-74 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10462 | 28 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72210.1 | 6e-19 | bHLH family protein |