PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539172.1_FGP002
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 238aa    MW: 27048.1 Da    PI: 10.0046
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539172.1_FGP002genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF56.63.3e-18958150
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                       kri+n+  rqv fskRr  ++KKA+EL + C+aeva+++ s+ gk++ ++
  KN539172.1_FGP002  9 KRIKNEEARQVCFSKRRPSVFKKASELYTVCGAEVAMLVKSPAGKFFSFA 58
                       79********************************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554551.05E-23178IPR002100Transcription factor, MADS-box
SMARTSM004326.4E-24160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.24161IPR002100Transcription factor, MADS-box
PRINTSPR004047.0E-16323IPR002100Transcription factor, MADS-box
PfamPF003199.6E-211057IPR002100Transcription factor, MADS-box
PRINTSPR004047.0E-162338IPR002100Transcription factor, MADS-box
PRINTSPR004047.0E-163859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MTKRKIEIKR IKNEEARQVC FSKRRPSVFK KASELYTVCG AEVAMLVKSP AGKFFSFAAP  60
SVGFVLSRFH ATTTSSKHSN MGVRIQHDNS ATIKLHELNQ QHIELQNQLQ VQNEKMKALQ  120
EVAKKESGGK VMGWLNSKVE DICQEDLEEF KMVLESLKYL TRGIINQLFQ NYAIFSNMMR  180
VQHCVTALPN QQFLPSSEDV KPMIHHVPSS SYGWNTSIDS KPNSSDAHVV GARRYFPN
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539172.1_FGP002
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642726.11e-175agamous-like MADS-box protein AGL61
TrEMBLA0A0E0PXB41e-174A0A0E0PXB4_ORYRU; Uncharacterized protein
TrEMBLQ69WG71e-174Q69WG7_ORYSJ; MADS-box protein-like
STRINGORUFI06G14240.11e-174(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP169561112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-24AGAMOUS-like 62