PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539172.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CPP
Protein Properties Length: 457aa    MW: 50090.1 Da    PI: 7.9273
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539172.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR43.46.8e-1481118240
                TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                        +kk+CnCk+s+Clk+YCeCfaag +C+  C+C++C N  
  KN539172.1_FGP001  81 RKKHCNCKNSQCLKLYCECFAAGLYCDG-CHCKQCGNYV 118
                        689*************************.*******975 PP
2TCR51.12.6e-16165204140
                TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                        k++kgC+Ckks ClkkYCeCf+a+  Cs++CkC+dCkN e
  KN539172.1_FGP001 165 KHNKGCHCKKSGCLKKYCECFQANILCSKNCKCQDCKNFE 204
                        589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.7E-1380120IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163435.49781205IPR005172CRC domain
PfamPF036381.1E-1082117IPR005172CRC domain
SMARTSM011141.5E-18165206IPR033467Tesmin/TSO1-like CXC domain
PfamPF036389.8E-13168203IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MEKKQMEQQP QQPESEPEPA APAPAAAAEA KATPPQPQPQ PQQQKPAAPV QPQMPTPRPW  60
PVAFIPPKPV AEIKSTPSTK RKKHCNCKNS QCLKLYCECF AAGLYCDGCH CKQCGNYVGN  120
ESARQEAINS TKQRNPKAFQ PKIENGSNAL NLRKDDAGAP ASLPKHNKGC HCKKSGCLKK  180
YCECFQANIL CSKNCKCQDC KNFEGSEELR LITQGDNSSD RNNIQHAANV ALNGAIGSSG  240
YRYSPVRRKR PPEDHLYQKL NGEGSTMQTQ FQEANHVDSS EITSSTGLEG CYSNYQSRSN  300
VVYRSALANT ISPTDATGLA KHLVIVCRKA ADAFLTTTEN KGEMEVEREI HTDSDGATNM  360
DQQNGGDFGP CCNSLEDSRP ASPGTQALMC DEQGSTFGTD YRISFPVALH DQDTSELNAQ  420
QEKAVLTGFR DYLRTVITRG KINGTEFAKI FLSLKRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A4e-26752144132Protein lin-54 homolog
5fd3_B4e-26752144132Protein lin-54 homolog
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539172.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8362560.0CT836256.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA111J17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641295.10.0protein tesmin/TSO1-like CXC 7
TrEMBLQ69WH40.0Q69WH4_ORYSJ; Tesmin-like
STRINGOBART06G13280.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57552653
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.13e-87Tesmin/TSO1-like CXC domain-containing protein