PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539171.1_FGP007
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 428aa    MW: 47752.4 Da    PI: 6.6424
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539171.1_FGP007genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding569.4e-181461148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g W++eEde+l + ++++G g+W+t+++  g+ R++k+c++rw +yl
  KN539171.1_FGP007 14 KGLWSPEEDEKLMNHITKHGHGCWSTVPKLAGLQRCGKSCRLRWINYL 61
                       678*******************************************97 PP
2Myb_DNA-binding48.12.7e-1567110146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        rg++++eE++l+v++++ lG++ W+ Ia +++ gRt++++k+ w++
  KN539171.1_FGP007  67 RGAFSQEEEDLIVELHAVLGNR-WSQIATRLP-GRTDNEIKNLWNS 110
                        89********************.*********.*********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-27664IPR009057Homeodomain-like
PROSITE profilePS5129418.396961IPR017930Myb domain
SuperFamilySSF466892.85E-2912108IPR009057Homeodomain-like
SMARTSM007176.5E-121363IPR001005SANT/Myb domain
PfamPF002495.5E-151461IPR001005SANT/Myb domain
CDDcd001671.04E-101761No hitNo description
PROSITE profilePS5129425.60162116IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.5E-2565116IPR009057Homeodomain-like
SMARTSM007176.5E-1366114IPR001005SANT/Myb domain
PfamPF002498.8E-1467110IPR001005SANT/Myb domain
CDDcd001671.59E-969109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0009733Biological Processresponse to auxin
GO:0010089Biological Processxylem development
GO:0010119Biological Processregulation of stomatal movement
GO:0010214Biological Processseed coat development
GO:0048364Biological Processroot development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MGRHSCCYKQ KLRKGLWSPE EDEKLMNHIT KHGHGCWSTV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGAF SQEEEDLIVE LHAVLGNRWS QIATRLPGRT DNEIKNLWNS CIKKKLRQKG  120
IDPNTHKPLA EVDRSKATPT ISTDRTSESS DVDPSSGVAL HNLSHLLSET AQSSELLPVK  180
VTKPRTQAPG LTRLKVPPKE LFLDQLTSGH ENLPSCRSSG PIPNFPFQQL LCYNNDFNSM  240
DVGNRNSLWY NQNESSSSTI STVMPPVSPS TLSTSTGLNP SPDNANSRGT GIHNAQFYWD  300
TNNPSSSSST GSSGNNGLGF ELQSTSSLLE TNIFPWSDLA PEKDSQAQLE EELKWPDLLH  360
GTFSEMPAPM QNLSQSLYED VVKAESQFNM EGLCAAWSQN LQPQQHLPVV SDMYDKDLQR  420
MSLSFENI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-28121165108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00134DAPTransfer from AT1G09540Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539171.1_FGP007
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1118030.0AK111803.1 Oryza sativa Japonica Group cDNA clone:J013087D08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627109.10.0transcription factor MYB61
TrEMBLA0A0D9Y6Z10.0A0A0D9Y6Z1_9ORYZ; Uncharacterized protein
STRINGOGLUM01G13340.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23103794
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09540.12e-90myb domain protein 61