PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539162.1_FGP006
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family E2F/DP
Protein Properties Length: 367aa    MW: 41086.1 Da    PI: 4.7377
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539162.1_FGP006genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP45.89.7e-15951263871
            E2F_TDP  38 dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                        +v  ++RRiYDi+NVLe+ +liekk kn+irw+g
  KN539162.1_FGP006  95 QV--RKRRIYDITNVLEGTGLIEKKLKNRIRWRG 126
                        34..8***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM013727.9E-861126IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.5E-1379126IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467857.48E-1093127IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.3E-1395127IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd146601.94E-29136215No hitNo description
SuperFamilySSF1440741.41E-24137216No hitNo description
PfamPF164217.0E-20141215IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MAKWKALCNV VFWYNLVLGY LLKRKTPCGE SEAAESSERM MTSPGFTEGV GSPLITPVSG  60
KSSRTTKSMA KFNKAGPQTP ISNAGKFIYG FQQKQVRKRR IYDITNVLEG TGLIEKKLKN  120
RIRWRGSDDS GTNLDSDISC LKTEVENLYI QEQALDRSIS EIREKMEELT EDESNHRWLF  180
VTEDDIKGLP CFQNEALIAI KGPRGTTVEV PDPDELLPQK KLSDEHPYYI ISQYKKMEEL  240
GETATPPRHA SVVEPPSIAT EAGHSSKQTM PLNVQQDIQE TPELNASRAF GRMKKITPSD  300
VDTDADYWLL TDDDISITHM WTTASEMQWD QIDTNDFLAE EISDTPCALN QPSAAASEPT  360
GVGFNHG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
196118RKRRIYDITNVLEGTGLIEKKLK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539162.1_FGP006
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0675810.0AK067581.1 Oryza sativa Japonica Group cDNA clone:J013113N12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637107.10.0transcription factor E2FA isoform X2
TrEMBLA0A0D3FVQ30.0A0A0D3FVQ3_9ORYZ; Uncharacterized protein
TrEMBLA0A0D9ZKL50.0A0A0D9ZKL5_9ORYZ; Uncharacterized protein
STRINGOGLUM04G11850.10.0(Oryza glumipatula)
STRINGOBART04G12180.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62537148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36010.12e-65E2F transcription factor 3