PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539144.1_FGP006
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 574aa    MW: 62402.4 Da    PI: 4.5247
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539144.1_FGP006genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF40.82.8e-131349339
                       --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS
             SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevavii 39
                       +++++ r +tf kRrng++K A+ LS+L++a vav+i
  KN539144.1_FGP006 13 VDDERERDITFFKRRNGLFKCASDLSILTGASVAVVI 49
                       578999*****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.6E-8163IPR002100Transcription factor, MADS-box
CDDcd002664.39E-17666No hitNo description
SuperFamilySSF554558.37E-13761IPR002100Transcription factor, MADS-box
PROSITE profilePS5006613.541349IPR002100Transcription factor, MADS-box
PfamPF003195.5E-151453IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 574 aa     Download sequence    Send to blast
MPRRARRTGA AYVDDERERD ITFFKRRNGL FKCASDLSIL TGASVAVVIE DQNRSKFHAV  60
GTPTGRLAPL ERELAWLKGE AAEKDEATKA SKARFKMAQK KEENEEEGDT KKKKLFFSKP  120
DKLSSDEMNE LLAEMLEIKK ELNVRLPPLR RRGGKRPIQG SSVPPPPPPP PPPPPQPEQQ  180
LQLPQWPNLS GPHNQLLPVA PPPFVADQPP PPPPPAAGGS LWIPELPPPP VEGSPWAGLL  240
PLRPPRFAGM EPSFLESQQA PPPAQVSTQL APLPLIREEA PLLQEPFLFA DQAPVLAPLP  300
APLQMPVAEI HLPLQAPLLQ EPFLFSDQAP ALAPLPSPLQ MPVAQTHLPL QVQAPFMQEP  360
FLFSDQAPVL APPPTPLQMP VEAHMPLEAP WIQEPFLMPD QAPVHAPPPT PLLMPVGADH  420
FPLEAPLFQE SLIMADQKSV HALPPPPLQM PLEAHLPPAA QVYNQDLAVQ QQPQEYENYD  480
YMFENVGLPQ PVAAGAGDNG FAAMGNNDNP FGYQQLVASP LYDGQIYFGS GVDDMGVPPA  540
GDFGGVPEAA LPEVEHASSS GWGNNITGDA GAWF
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539144.1_FGP006
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0031040.0AP003104.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0038J17.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636878.10.0pollen-specific leucine-rich repeat extensin-like protein 2
TrEMBLA0A0D9Y5440.0A0A0D9Y544_9ORYZ; Uncharacterized protein
STRINGOGLUM01G08130.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP155501117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24260.33e-08MIKC_MADS family protein