PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539141.1_FGP001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CPP
Protein Properties Length: 904aa    MW: 100870 Da    PI: 7.9367
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539141.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR475.1e-15203243141
                TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                        k++kgC+Ck+++ClkkYCeCf+a ++Cse+C+C++CkN ++
  KN539141.1_FGP001 203 KHTKGCKCKRTECLKKYCECFKASVFCSEDCRCTGCKNYKS 243
                        589***********************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011144.6E-16203244IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163414.964203243IPR005172CRC domain
PfamPF036382.0E-11206241IPR005172CRC domain
SMARTSM002681.7E-173513902IPR004000Actin family
Gene3DG3DSA:3.30.420.402.1E-52514686No hitNo description
PfamPF000221.9E-101514900IPR004000Actin family
SuperFamilySSF530676.15E-41515654No hitNo description
PRINTSPR001901.6E-19525534IPR004000Actin family
CDDcd000126.56E-16551690No hitNo description
PRINTSPR001901.6E-19562584IPR004000Actin family
PRINTSPR001901.6E-19616629IPR004000Actin family
PRINTSPR001901.6E-19641660IPR004000Actin family
SuperFamilySSF530675.01E-68647899No hitNo description
Gene3DG3DSA:3.90.640.104.4E-29687772No hitNo description
Gene3DG3DSA:3.30.420.405.8E-19773899No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007015Biological Processactin filament organization
GO:0009825Biological Processmultidimensional cell growth
GO:0010090Biological Processtrichome morphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 904 aa     Download sequence    Send to blast
MTVKPMCILA SSFVLFTCVQ FGTRVGSRNW WEMEKPLQLC PGSVKIDFAS ASYAGKADIA  60
ATAAALSHAL GPPCYQLPLA KVNSSLPLWP PVICPSTFAQ KRPMSLPSPP PAKKLQVQRS  120
SSMLPQDFPK LEVLTVEKPT KLQVRRSPQH VSPAPKQGSL KMERPLLPRP ATFIDVLPFL  180
RARIGWSTLL KESKAAEGVI VGKHTKGCKC KRTECLKKYC ECFKASVFCS EDCRCTGCKN  240
YKSNEDRISQ QNTVHAHHVQ NPASSGMVGQ SVMIFHAAEN DSSLSLAASV LSYSPTSSVT  300
REDAKSLVKY VPHEVTYRPS LADIIQIEDV NELCNLLILV SRQAGATLLE SGIKENTKRK  360
KLNRAESCLS STNHDREAIQ KEPAKQMCSL EKSSNEVLIA EGRLELPRAD PFDVQKGNKR  420
PLSPGTQALM CDEQDAVFPD SKAPDATPST TEENLVDIFK EQEKRVLTNF RDYLCKLATC  480
GKLQELKLSL ASTNCSEQAF ADHGNNSSIT RVAKYVKCGF AGENFPTSVF PCVVGRPLLR  540
YEESLQEQEL TDIVVGAACA DLRHQLDVSY PVTNGIVQSW DDMGHIWDHA FYSELKVDPS  600
ECKILLTDPP LNPVKNREKM IETMFEKYNF AGVFIQVQAV LSLYAQGLLT GLVIDSGDGV  660
THVVPVVDGF SYPHITKRMN VAGRHITSYL VDLLSRRGYA MNKSADFETV REIKEKLCYL  720
SLLSHFIELK RENMYSYDYK REYQLGLETT ILVKSYTLPD GRVIKVGTER FQAPEALFTP  780
ELIDVEGDGM ADMAFRCIQE MDIDNRMTLY QHIVLSGGST MYPGLPSRLE KEMLDRYLDV  840
VLKGNKDGLK KLRLRIEDPP RRKHMVYLGG AVLAGIMKDA PEFWITRQEY QEEGLACLRK  900
CGQA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tyq_B1e-17151590217390Actin-related Protein 2
1u2v_B1e-17151590217390Actin-Related Protein 2
2p9i_B1e-17151590217390Actin-like protein 2
2p9l_B1e-17151590217390Actin-like protein 2
2p9n_B1e-17151590217390Actin-like protein 2
2p9p_B1e-17151590217390Actin-like protein 2
2p9s_B1e-17151590217390Actin-like protein 2
2p9u_B1e-17151590217390Actin-like protein 2
3dxk_B1e-17151590217390Actin-related protein 2
3dxm_B1e-17151590217390Actin-related protein 2
3rse_B1e-17151590217390Actin-related protein 2
3ukr_B1e-17151590217390Actin-related protein 2
3uku_B1e-17151590217390ACTIN-LIKE PROTEIN 2
3ule_B1e-17151590217390Actin-related protein 2
4jd2_B1e-17151590217390Actin-related protein 2
4xei_B1e-17151590217390Actin-related protein 2
4xf2_B1e-17151590217390Actin-related protein 2
4xf2_U1e-17151590217390Actin-related protein 2
6dec_B1e-17151590217390Actin-related protein 2
6dec_I1e-17151590217390Actin-related protein 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539141.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0058170.0AP005817.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OJ1118_F01.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D9X7850.0A0A0D9X785_9ORYZ; Uncharacterized protein
STRINGLPERR08G10430.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP988922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20110.28e-40Tesmin/TSO1-like CXC domain-containing protein