PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN539141.1_FGP001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | CPP | ||||||||
Protein Properties | Length: 904aa MW: 100870 Da PI: 7.9367 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 47 | 5.1e-15 | 203 | 243 | 1 | 41 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 k++kgC+Ck+++ClkkYCeCf+a ++Cse+C+C++CkN ++ KN539141.1_FGP001 203 KHTKGCKCKRTECLKKYCECFKASVFCSEDCRCTGCKNYKS 243 589***********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 4.6E-16 | 203 | 244 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 14.964 | 203 | 243 | IPR005172 | CRC domain |
Pfam | PF03638 | 2.0E-11 | 206 | 241 | IPR005172 | CRC domain |
SMART | SM00268 | 1.7E-173 | 513 | 902 | IPR004000 | Actin family |
Gene3D | G3DSA:3.30.420.40 | 2.1E-52 | 514 | 686 | No hit | No description |
Pfam | PF00022 | 1.9E-101 | 514 | 900 | IPR004000 | Actin family |
SuperFamily | SSF53067 | 6.15E-41 | 515 | 654 | No hit | No description |
PRINTS | PR00190 | 1.6E-19 | 525 | 534 | IPR004000 | Actin family |
CDD | cd00012 | 6.56E-16 | 551 | 690 | No hit | No description |
PRINTS | PR00190 | 1.6E-19 | 562 | 584 | IPR004000 | Actin family |
PRINTS | PR00190 | 1.6E-19 | 616 | 629 | IPR004000 | Actin family |
PRINTS | PR00190 | 1.6E-19 | 641 | 660 | IPR004000 | Actin family |
SuperFamily | SSF53067 | 5.01E-68 | 647 | 899 | No hit | No description |
Gene3D | G3DSA:3.90.640.10 | 4.4E-29 | 687 | 772 | No hit | No description |
Gene3D | G3DSA:3.30.420.40 | 5.8E-19 | 773 | 899 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007015 | Biological Process | actin filament organization | ||||
GO:0009825 | Biological Process | multidimensional cell growth | ||||
GO:0010090 | Biological Process | trichome morphogenesis |
Sequence ? help Back to Top |
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Protein Sequence Length: 904 aa Download sequence Send to blast |
MTVKPMCILA SSFVLFTCVQ FGTRVGSRNW WEMEKPLQLC PGSVKIDFAS ASYAGKADIA 60 ATAAALSHAL GPPCYQLPLA KVNSSLPLWP PVICPSTFAQ KRPMSLPSPP PAKKLQVQRS 120 SSMLPQDFPK LEVLTVEKPT KLQVRRSPQH VSPAPKQGSL KMERPLLPRP ATFIDVLPFL 180 RARIGWSTLL KESKAAEGVI VGKHTKGCKC KRTECLKKYC ECFKASVFCS EDCRCTGCKN 240 YKSNEDRISQ QNTVHAHHVQ NPASSGMVGQ SVMIFHAAEN DSSLSLAASV LSYSPTSSVT 300 REDAKSLVKY VPHEVTYRPS LADIIQIEDV NELCNLLILV SRQAGATLLE SGIKENTKRK 360 KLNRAESCLS STNHDREAIQ KEPAKQMCSL EKSSNEVLIA EGRLELPRAD PFDVQKGNKR 420 PLSPGTQALM CDEQDAVFPD SKAPDATPST TEENLVDIFK EQEKRVLTNF RDYLCKLATC 480 GKLQELKLSL ASTNCSEQAF ADHGNNSSIT RVAKYVKCGF AGENFPTSVF PCVVGRPLLR 540 YEESLQEQEL TDIVVGAACA DLRHQLDVSY PVTNGIVQSW DDMGHIWDHA FYSELKVDPS 600 ECKILLTDPP LNPVKNREKM IETMFEKYNF AGVFIQVQAV LSLYAQGLLT GLVIDSGDGV 660 THVVPVVDGF SYPHITKRMN VAGRHITSYL VDLLSRRGYA MNKSADFETV REIKEKLCYL 720 SLLSHFIELK RENMYSYDYK REYQLGLETT ILVKSYTLPD GRVIKVGTER FQAPEALFTP 780 ELIDVEGDGM ADMAFRCIQE MDIDNRMTLY QHIVLSGGST MYPGLPSRLE KEMLDRYLDV 840 VLKGNKDGLK KLRLRIEDPP RRKHMVYLGG AVLAGIMKDA PEFWITRQEY QEEGLACLRK 900 CGQA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tyq_B | 1e-171 | 515 | 902 | 17 | 390 | Actin-related Protein 2 |
1u2v_B | 1e-171 | 515 | 902 | 17 | 390 | Actin-Related Protein 2 |
2p9i_B | 1e-171 | 515 | 902 | 17 | 390 | Actin-like protein 2 |
2p9l_B | 1e-171 | 515 | 902 | 17 | 390 | Actin-like protein 2 |
2p9n_B | 1e-171 | 515 | 902 | 17 | 390 | Actin-like protein 2 |
2p9p_B | 1e-171 | 515 | 902 | 17 | 390 | Actin-like protein 2 |
2p9s_B | 1e-171 | 515 | 902 | 17 | 390 | Actin-like protein 2 |
2p9u_B | 1e-171 | 515 | 902 | 17 | 390 | Actin-like protein 2 |
3dxk_B | 1e-171 | 515 | 902 | 17 | 390 | Actin-related protein 2 |
3dxm_B | 1e-171 | 515 | 902 | 17 | 390 | Actin-related protein 2 |
3rse_B | 1e-171 | 515 | 902 | 17 | 390 | Actin-related protein 2 |
3ukr_B | 1e-171 | 515 | 902 | 17 | 390 | Actin-related protein 2 |
3uku_B | 1e-171 | 515 | 902 | 17 | 390 | ACTIN-LIKE PROTEIN 2 |
3ule_B | 1e-171 | 515 | 902 | 17 | 390 | Actin-related protein 2 |
4jd2_B | 1e-171 | 515 | 902 | 17 | 390 | Actin-related protein 2 |
4xei_B | 1e-171 | 515 | 902 | 17 | 390 | Actin-related protein 2 |
4xf2_B | 1e-171 | 515 | 902 | 17 | 390 | Actin-related protein 2 |
4xf2_U | 1e-171 | 515 | 902 | 17 | 390 | Actin-related protein 2 |
6dec_B | 1e-171 | 515 | 902 | 17 | 390 | Actin-related protein 2 |
6dec_I | 1e-171 | 515 | 902 | 17 | 390 | Actin-related protein 2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN539141.1_FGP001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005817 | 0.0 | AP005817.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OJ1118_F01. | |||
GenBank | AP014964 | 0.0 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0D9X785 | 0.0 | A0A0D9X785_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR08G10430.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9889 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20110.2 | 8e-40 | Tesmin/TSO1-like CXC domain-containing protein |