PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539137.1_FGP003
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 316aa    MW: 33209.3 Da    PI: 10.3171
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539137.1_FGP003genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH185e-0666791326
                       S--TTTTT-SS-SS CS
            zf-CCCH 13 GtCkyGdrCkFaHg 26
                         C++G++C+F H 
  KN539137.1_FGP003 66 SGCPFGSSCHFLHN 79
                       56***********7 PP
2zf-CCCH201.2e-06121146227
                        -S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                        kt+ C+ +     Ck G++C+FaHg+
  KN539137.1_FGP003 121 KTRMCNKYNTAEGCKWGSKCHFAHGE 146
                        89**********************96 PP
3zf-CCCH36.58.3e-12281306127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                        +kt+lC +f + G C +GdrC+FaHg+
  KN539137.1_FGP003 281 FKTKLCENFNK-GSCTFGDRCHFAHGE 306
                        69*********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003565.35780IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-56179IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.6396281IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.0E-14116151IPR000571Zinc finger, CCCH-type
SMARTSM003560.97119146IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.727119147IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.97E-8119150IPR000571Zinc finger, CCCH-type
SMARTSM003221.4E-10186256IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.107.2E-15187255IPR004088K Homology domain, type 1
PROSITE profilePS5008414.76187251IPR004088K Homology domain, type 1
SuperFamilySSF547918.04E-15189281IPR004088K Homology domain, type 1
CDDcd001055.34E-13189251No hitNo description
PfamPF000136.2E-11189252IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.102.6E-17278313IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-7280306IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.131280307IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.49E-9280311IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-9281306IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MEAGGGKRAA PEGTNGAAKR ARGVNLKVKL IKLWILDIIV LYHLPFILFL SEKKLLLRGN  60
KWVNTSGCPF GSSCHFLHNF PGGYQAAAKM TSHGGAAVAA PPGRMPLGPG APNGPPTSSV  120
KTRMCNKYNT AEGCKWGSKC HFAHGERELG KPMLLDNSMP HPMGSMPFEA PPMPGPDIVP  180
PSTFGASATA KISVDASLAG GIIGKGGTNT KHISRMTGAK LAIRDNESNP SLKNIELEGT  240
FDQIKHASAM VTELIVRISG NAPPAKNPGR GSHAGGPGSN FKTKLCENFN KGSCTFGDRC  300
HFAHGESELR KPPAAA
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539137.1_FGP003
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0036090.0AP003609.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0012B02.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641069.10.0zinc finger CCCH domain-containing protein 44
SwissprotQ69XQ30.0C3H44_ORYSJ; Zinc finger CCCH domain-containing protein 44
TrEMBLA0A0E0ABX10.0A0A0E0ABX1_9ORYZ; Uncharacterized protein
STRINGOGLUM06G22250.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125438127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.18e-50C3H family protein