PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN539136.1_FGP013 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | TALE | ||||||||
Protein Properties | Length: 174aa MW: 19867.6 Da PI: 8.8248 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 21.5 | 4.1e-07 | 112 | 140 | 27 | 55 |
HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 27 aeereeLAkklgLterqVkvWFqNrRake 55 +e++ +LA+ +gL+ +q+ +WF N+R ++ KN539136.1_FGP013 112 EEDKVRLAAMTGLDPKQINNWFINQRKRH 140 578889********************985 PP | |||||||
2 | ELK | 34.2 | 5.6e-12 | 31 | 52 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK++Ll+KYsg+L+ L++EF+ KN539136.1_FGP013 31 ELKEMLLKKYSGCLSRLRSEFL 52 9********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03789 | 6.6E-9 | 31 | 52 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 10.423 | 31 | 51 | IPR005539 | ELK domain |
SMART | SM01188 | 3.6E-6 | 31 | 52 | IPR005539 | ELK domain |
SMART | SM00389 | 5.4E-4 | 53 | 147 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 7.56E-5 | 53 | 90 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.0E-25 | 56 | 145 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 4.83E-9 | 112 | 144 | No hit | No description |
SuperFamily | SSF46689 | 4.11E-10 | 112 | 154 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 9.62 | 112 | 143 | IPR001356 | Homeobox domain |
Pfam | PF05920 | 2.0E-10 | 112 | 139 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 118 | 141 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 174 aa Download sequence Send to blast |
MVGSSEDEPC SGDADAADFG QEHSSRLADH ELKEMLLKKY SGCLSRLRSE FLKKRKKGKL 60 PKDARSALMD WWNTHYRWPY PTVMSRKRLF DTQKPLTHTD LGLCLPIDLS QEEDKVRLAA 120 MTGLDPKQIN NWFINQRKRH WKPSEDMRFA LMEGVTGGSS SGTTLYFDTG TIGP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 46 | 55 | LRSEFLKKRK |
2 | 52 | 56 | KKRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693}. | |||||
UniProt | Probable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693, ECO:0000269|PubMed:10488233}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN539136.1_FGP013 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC130598 | 0.0 | AC130598.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0056I11, complete sequence. | |||
GenBank | AP014961 | 0.0 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015637898.1 | 5e-89 | homeobox protein knotted-1-like 10 | ||||
Refseq | XP_015692467.1 | 2e-89 | PREDICTED: LOW QUALITY PROTEIN: homeobox protein knotted-1-like 10, partial | ||||
Swissprot | A2Y007 | 4e-90 | KNOSA_ORYSI; Homeobox protein knotted-1-like 10 | ||||
Swissprot | Q7GDL5 | 4e-90 | KNOSA_ORYSJ; Homeobox protein knotted-1-like 10 | ||||
TrEMBL | A0A0D9WCC3 | 2e-88 | A0A0D9WCC3_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0KY08 | 1e-89 | A0A0E0KY08_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC05G01700.4 | 2e-90 | (Oryza punctata) | ||||
STRING | LPERR05G01890.1 | 3e-89 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1698 | 38 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G23380.2 | 4e-34 | KNOTTED1-like homeobox gene 6 |