PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN539136.1_FGP007 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | WRKY | ||||||||
Protein Properties | Length: 225aa MW: 25023.4 Da PI: 6.9269 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 90.9 | 1e-28 | 85 | 143 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D ++WrKYGqK++kgs++pr+YY+C+s gCp++k+v+++++d ++++itY+++Hnh+ KN539136.1_FGP007 85 ADSWSWRKYGQKPIKGSPHPRGYYKCSSYrGCPARKQVDKCRNDASLLIITYTSDHNHD 143 69************************9877****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.4E-32 | 77 | 144 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.44E-24 | 79 | 143 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.2E-33 | 84 | 144 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.3E-24 | 86 | 143 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.105 | 86 | 145 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MENHKDHTCK IATTTLVIVP LLLSLHQLSL FFLLLLPYAC VVSVAEMTKM SSMKADGSVP 60 KRRRQDVQKV VVSLKDHKVE QGPPADSWSW RKYGQKPIKG SPHPRGYYKC SSYRGCPARK 120 QVDKCRNDAS LLIITYTSDH NHDNYATTTT NSVQEQAHNP DTSDALSNGM SLAEVVTVAS 180 SKLPSEEESC DFFDELEELP VSASPLPSLS FMVQECSFSD ARTLL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 2e-17 | 86 | 143 | 16 | 72 | WRKY transcription factor 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN539136.1_FGP007 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT836466 | 0.0 | CT836466.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN038N04, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015639937.1 | 1e-129 | probable WRKY transcription factor 69 | ||||
TrEMBL | Q688Q4 | 1e-154 | Q688Q4_ORYSJ; Putative WRKY transcription factor | ||||
STRING | OMERI05G02180.1 | 1e-138 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14912 | 18 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29280.1 | 9e-34 | WRKY DNA-binding protein 65 |