PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539136.1_FGP004
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 513aa    MW: 58146 Da    PI: 8.6548
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539136.1_FGP004genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_142.41.5e-132776453
                       XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1  4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelk 53
                        ++ +r+ +NRe+ArrsR+RK++++eeL  +++ L+aeN +   ++  + 
  KN539136.1_FGP004 27 ERKRKRMLSNRESARRSRARKQQRLEELIAEAARLQAENARVEAQIGAYA 76
                       46789999*******************************98887776665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003385.6E-152488IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.0012681IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.3E-112681No hitNo description
SuperFamilySSF579594.75E-102880No hitNo description
PfamPF001705.1E-102879IPR004827Basic-leucine zipper domain
PROSITE patternPS0003603146IPR004827Basic-leucine zipper domain
Gene3DG3DSA:3.80.10.101.9E-11113154IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.101.9E-11189405IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF520581.0E-9206411IPR032675Leucine-rich repeat domain, L domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MSSPSRRSSS PESNTSGGGG GGYAADERKR KRMLSNRESA RRSRARKQQR LEELIAEAAR  60
LQAENARVEA QIGAYAGELS KWLVTSLSDR CYLFTHTIEG YIVSNFPKSS DEKLLESIEM  120
DIWHHIHSLM PMRDAARFAC ISQAFLRSWR CHPNLALDRI TLCSDPLERS FGWKIDSILR  180
NHSGIGLKIL RLDLDDDPNN FLYVDSWLQA AVTPGIEELT LMLYEKYNFP CSLLSDGVRS  240
SIRYLRLRYC AFHPTVELGP LRSLTNLQLQ SLRITGDELE CFLSNSLALE QLKLMGCTEI  300
IFLKIPCVLQ QLKSLTVMAC HRLQALESEA PNLSRIYLHR GKIKFSPGEA LKMKDFTLSH  360
SNVICYARAE FPSIMPNLET LLLHSSQEVV NTPMLPSKFF YLKHLSITMI SGGAFSPSYD  420
YFSLVSQGRM QHESIFGGSS AHLRQLPEQG RHDCLKKVYI VGFSSEKGLV ELTYCIVKNA  480
VSLEHLVLNT LRVWGWCHRG DYGKNCMRFS KTA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14047RRSRARKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539136.1_FGP004
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126131e-130CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
GenBankCT8280941e-130CT828094.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN036O01, full insert sequence.
GenBankCT8336731e-130CT833673.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA102G21, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804219.11e-147putative F-box/FBD/LRR-repeat protein At3g49030 isoform X1
TrEMBLA0A0D9WCC00.0A0A0D9WCC0_9ORYZ; Uncharacterized protein
TrEMBLA0A0D9WCC20.0A0A0D9WCC2_9ORYZ; Uncharacterized protein
STRINGLPERR05G01880.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4922