PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539134.1_FGP010
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 1338aa    MW: 151201 Da    PI: 6.7131
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539134.1_FGP010genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY80.61.7e-2510421102158
                         ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
               WRKY    1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58  
                         +dDg++WrKYGqK+++g  +prsYYrC+++   +Cp+kk+v+ +++dp+vv+++Y geH++
  KN539134.1_FGP010 1042 VDDGFSWRKYGQKQIQGDMHPRSYYRCAYSrdnHCPAKKQVQPTKDDPTVVDVVYYGEHTC 1102
                         59***************************98999*************************98 PP
2WRKY76.62.9e-2411741233359
                         -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY    3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59  
                         Dgy+WrKYGqK++ g+++pr+YYrC+++   gC+++k+v r++ dp +++++Y g H+++
  KN539134.1_FGP010 1174 DGYSWRKYGQKDILGAKYPRGYYRCSHRntqGCKATKQVHRTDGDPLLFDVVYLGVHTCS 1233
                         9**************************98889**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd147982.28E-122132No hitNo description
SuperFamilySSF525401.06E-55255526IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3004.2E-17276439IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009312.6E-54279552IPR002182NB-ARC
PRINTSPR003645.4E-15291306No hitNo description
PRINTSPR003645.4E-15363377No hitNo description
PRINTSPR003645.4E-15460474No hitNo description
Gene3DG3DSA:3.80.10.109.3E-17506514IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF520587.82E-24591987IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.109.3E-17686916IPR032675Leucine-rich repeat domain, L domain-like
PRINTSPR003645.4E-15815831No hitNo description
Gene3DG3DSA:2.20.25.805.4E-2610351103IPR003657WRKY domain
PROSITE profilePS5081121.20710371100IPR003657WRKY domain
SuperFamilySSF1182904.84E-2410401104IPR003657WRKY domain
SMARTSM007745.4E-3310421104IPR003657WRKY domain
PfamPF031064.6E-2510431102IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.9E-2511591233IPR003657WRKY domain
PROSITE profilePS5081121.44811671230IPR003657WRKY domain
SuperFamilySSF1182901.44E-2211681233IPR003657WRKY domain
SMARTSM007743.8E-3611721234IPR003657WRKY domain
PfamPF031061.2E-2311741232IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043531Molecular FunctionADP binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1338 aa     Download sequence    Send to blast
MEGTVFNLPG RLEELLCHHG SMLPKGADEE IPLIKQDLEE IISILHGHSE PKLEDHGMVV  60
RCWMKEVREL SYDIEDSIDQ YEHAARSQNR PNIHHRKFNR WRGNKIPCIP QKLKQRLWMA  120
NKIREFSLRA QEALQRHAMY NNLGGVASTA STTRGDVCSA TPLHPTQTQF REHVDNVRSV  180
SIEADGMEAA LNDLNKLKNL LAGIPTASLV QFREHADKVR GIHTDIEAIL NKLENIPPGI  240
TTTTTTRGDV SSTSSRQPTR FMESTCHVGI DAAMDQLENL IDVCGEEKLK VVSIVGVGGV  300
GKTTLANKLY HKLRWQFECW AFVRSSQKTD MRRLLINILS QVRPHQSPDN WKVHSLISSI  360
RTHLQDKRYL IIIDDLWATS TWDIIKCALP DGNNSCRILT TTEIEDLALQ SCSYDLKFIF  420
KMKAFGEDDS RKLFFSSIFG SHSKCPPEVS ETLYDIVRKC GGLPLAIVIV ASLVASHLEK  480
QEQWDYINKS LGYSLMANPT LEGMKQLLNL CYNNLPQHLK ACMLYLSMYQ EDHIIWKDDL  540
VSQWIAEGFI CAIEGHDEEE ISRAYFDELL GRKIIQPVHI DDNGEVLSCV IHHVVLNFVT  600
YKSIEENFTI VIDHSQTTIR FADKIRRLSV HFGNVEDSTP PTNMRLSQVR TVAFFGVLKY  660
MPFILEFRLI KVLVLHFLGD EDSTGIFDLT KISELVRLRY LKVTSNVTVK LPTQMQGLPY  720
LETLKIDGTI SEVPTDIYLP GLLHLTLPAK TSLPNGIVHM TSLRTIGYFD LSCNSAENLW  780
SLGELTNLRD LQLTCSEIHS DNLKNNMKYL GSILGKLHNL KSMTLSPVGS SYADTLHIDR  840
ATSTGISVIG CSSVSSPPAL LQRFDLLPCV CIFSNLPNWI GQLGNLCILK IGIRKITSDS  900
IDVLGVLPEL TVLSLYVHTK PEERIIFKKA GFSILKYFKF RCSLVWMKFE AGALPNLRKL  960
KLGFDVHRED RYDTVPFGIE HLSRLEEISA KIRIDCTADN LSRRFAESSF ANAIRMHTGC  1020
PSINVRKTQP TERTKVRMSS MVDDGFSWRK YGQKQIQGDM HPRSYYRCAY SRDNHCPAKK  1080
QVQPTKDDPT VVDVVYYGEH TCGYTAHSRP TGSSNLQEEP QQPGLEQIPA TSPYYDWIDL  1140
RFIIPPSNKK VEKTKRKRVQ VRVSSVEDVS QEYDGYSWRK YGQKDILGAK YPRGYYRCSH  1200
RNTQGCKATK QVHRTDGDPL LFDVVYLGVH TCSDHIASLN EQVLLSDLSS ASPQQSQINL  1260
QLSELDHSSA TVTCTASSSV VVDDQDHQVV TSAAASFLSV DDMLDLDEDG EVWTTTTDEA  1320
TAWDDGESIG EVSDMDFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j5t_C6e-38205794102692Disease resistance RPP13-like protein 4
6j5t_F6e-38205794102692Disease resistance RPP13-like protein 4
6j5t_G6e-38205794102692Disease resistance RPP13-like protein 4
6j5t_L6e-38205794102692Disease resistance RPP13-like protein 4
6j5t_O6e-38205794102692Disease resistance RPP13-like protein 4
6j5u_A6e-38205794102692Disease resistance RPP13-like protein 4
6j5v_A6e-38205794102692Disease resistance RPP13-like protein 4
6j5w_A6e-38205794102692Disease resistance RPP13-like protein 4
6j6i_C6e-38205794102692Disease resistance RPP13-like protein 4
6j6i_F6e-38205794102692Disease resistance RPP13-like protein 4
6j6i_G6e-38205794102692Disease resistance RPP13-like protein 4
6j6i_L6e-38205794102692Disease resistance RPP13-like protein 4
6j6i_O6e-38205794102692Disease resistance RPP13-like protein 4
6s2p_N2e-4026860611347NRC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539134.1_FGP010
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0660530.0AK066053.1 Oryza sativa Japonica Group cDNA clone:J013052I15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015617274.10.0disease resistance protein RGA5-like
RefseqXP_025877036.10.0disease resistance protein RGA5-like
TrEMBLA0A0D3HQ040.0A0A0D3HQ04_9ORYZ; Uncharacterized protein
STRINGOBART11G22970.20.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27511933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.25e-26WRKY family protein