PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539134.1_FGP007
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 1257aa    MW: 141751 Da    PI: 7.2267
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539134.1_FGP007genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY71.98.7e-239951056159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY    1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59  
                         +dDg++W KYGqK++ g+ +prsY+rC ++   gC ++k+v+ +++d ++++++Y geH+++
  KN539134.1_FGP007  995 VDDGFSWVKYGQKDILGTMYPRSYFRCIHRqtkGCLATKQVQPTDDDHQILDVIYYGEHTCD 1056
                         59**************************998889**************************97 PP
2WRKY78.95.6e-2511161177159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY    1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59  
                         ldDgy+WrKYG K++ g+++prsY+rCt++   gC ++k+++r + dp +++++Y+g+H+++
  KN539134.1_FGP007 1116 LDDGYSWRKYGLKDILGAKYPRSYFRCTHRntqGCVATKQIQRRDGDPLLFDVVYHGDHTCS 1177
                         59***************************98889**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.80.10.101.9E-1973136IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF525407.48E-57153423IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3002.1E-17170340IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009315.4E-56170449IPR002182NB-ARC
PRINTSPR003645.1E-14188203No hitNo description
PRINTSPR003645.1E-14260274No hitNo description
PRINTSPR003645.1E-14357371No hitNo description
Gene3DG3DSA:3.80.10.101.9E-19403411IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF520581.02E-23488863IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.101.9E-19583814IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:2.20.25.806.9E-239901057IPR003657WRKY domain
PROSITE profilePS5081119.4749901058IPR003657WRKY domain
SuperFamilySSF1182904.71E-229931057IPR003657WRKY domain
SMARTSM007747.8E-369951057IPR003657WRKY domain
PfamPF031066.4E-239961056IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.3E-2611031177IPR003657WRKY domain
SuperFamilySSF1182902.88E-2311101177IPR003657WRKY domain
PROSITE profilePS5081121.06911111174IPR003657WRKY domain
SMARTSM007741.8E-3711161178IPR003657WRKY domain
PfamPF031061.3E-2311171176IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043531Molecular FunctionADP binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1257 aa     Download sequence    Send to blast
MEGAMFNLPG RLDGLLLRHD SILPKGAEEE IPLIMQGLEK IISILHGHCS EPKLEDHAMV  60
VRCWMKETQF REHVDNVRSV SVDANGMEGA LNDLNKLKNL LAGIPTASLV QFKEHRNKLR  120
GIHTDIEAIL TKLKNITTTS TASRGDASST SSRQPTWFME STCHVGIDAA MNKLENLLDV  180
CGEEKLKVVS IVGVGGVGKT TLANKLYRKL RWQFECRAFV RTSQKTDMTR LLINILSQVR  240
PHQSPDNWKV HSLISSIRSY LQDKRFLIVI DDLWATSTWD IIKCALPEGN KSSRILTTTE  300
IEDLALQSCS YDLKFIFKMK AFGEDDSRKL LFNIVFGSHS KCPPEVSETL YDIVRKCGGL  360
PLAIVTVASL LASQLDKQEQ WDYINKSLGF SLMANPTLEG MKQLLNLCYN NLPQHLKACM  420
LYLSMYQEDH IIWKDDLVRQ WIAEGFICAT EGHDKEEISR AYFDELIGRK IIQPVHINDS  480
GEVLSCVVHH MVLNFVTYKS IEENFIIAID HSQATIRFAD KVRRLSIHFG NVEDAPPPTN  540
MRLSQVRTVA FFGVLKYMPF ILEFRLIKVL VLHFLGDEDS IGIFDLTKIS ELIRLRYLKV  600
TSNVTVKLPI QMQGLQYLET LKIDGKISEV PSDIIHLPGL LHLTLPAKTS LPNGIAHVTS  660
LRTIGYFDLS CNSVENLWRL GELTNLRDLQ LTYSEIHSDN LKDNMKYLGS ILGKLRNLIS  720
ITLSPPGSSC PDTLYIDRDT KTRINVDGWS SVSSPPALLQ RFELLPCVCI FSNLPNWIGQ  780
LGNLCILKIG IREVTSNNID VLGVLPELTV LSLYVHTKPA ERIVFDNAGF SILKYFKFIC  840
SVACMKFEMG AMPSLRKLKL GFDVHRADQH DIIPVGIEHL SGLEEISAKI RVACSAHDHC  900
KRFAESALSN AFMMHPGRPS VNIRCVDWTF DGKDDDNVRT QEEEHRTLQK QHHTAKEGSN  960
EKSPVKQRDP REGAHKSVDG RETLRRIRVK VSSTVDDGFS WVKYGQKDIL GTMYPRSYFR  1020
CIHRQTKGCL ATKQVQPTDD DHQILDVIYY GEHTCDQSAR SDDRQLKSSR PAASSNLQEP  1080
QQPGLEQSRP AAKRRRKTVR WKTQVRVSSV QDVGPLDDGY SWRKYGLKDI LGAKYPRSYF  1140
RCTHRNTQGC VATKQIQRRD GDPLLFDVVY HGDHTCSERA SLNEQVTWSR SSASSTEQSS  1200
TITYTAAAGS VEDDEEGVTS ATNFLSMDDM LDLGGGDVID MDFPSFDFDA IDALLLG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j5t_C2e-447069465694Disease resistance RPP13-like protein 4
6j5t_F2e-447069465694Disease resistance RPP13-like protein 4
6j5t_G2e-447069465694Disease resistance RPP13-like protein 4
6j5t_L2e-447069465694Disease resistance RPP13-like protein 4
6j5t_O2e-447069465694Disease resistance RPP13-like protein 4
6j5u_A2e-447069465694Disease resistance RPP13-like protein 4
6j5v_A2e-447069465694Disease resistance RPP13-like protein 4
6j5w_A2e-447069465694Disease resistance RPP13-like protein 4
6j6i_C2e-447069465694Disease resistance RPP13-like protein 4
6j6i_F2e-447069465694Disease resistance RPP13-like protein 4
6j6i_G2e-447069465694Disease resistance RPP13-like protein 4
6j6i_L2e-447069465694Disease resistance RPP13-like protein 4
6j6i_O2e-447069465694Disease resistance RPP13-like protein 4
6s2p_N1e-4416850315347NRC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539134.1_FGP007
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0660530.0AK066053.1 Oryza sativa Japonica Group cDNA clone:J013052I15, full insert sequence.
GenBankAK1211020.0AK121102.1 Oryza sativa Japonica Group cDNA clone:J023069N11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025877420.10.0disease resistance protein RGA5-like isoform X5
TrEMBLB8BIG60.0B8BIG6_ORYSI; Uncharacterized protein
STRINGONIVA03G01340.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27511933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.26e-33WRKY family protein