PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539129.1_FGP010
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family E2F/DP
Protein Properties Length: 318aa    MW: 35762 Da    PI: 9.2451
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539129.1_FGP010genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP81.66.9e-2696176171
            E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 
                        rkeksL+lltq+f+kl+ + e ++++l+e+ak+L+ e     ++++k+RR+YDi+NVL++lnliek     ++k+++rw g
  KN539129.1_FGP010  96 RKEKSLGLLTQNFVKLFLTMEIETISLDEAAKRLLGEghaanNMRTKVRRLYDIANVLSSLNLIEKtqqadSRKPAFRWLG 176
                        79****************************************************************9999999******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.0E-2493177IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.9E-3396176IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023192.9E-2197176IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467853.54E-1398176IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MMLVRRAKNR YTWIGFGGVP AALAELKGMA LRAVSSVASP SLDETSAANI SDDEDDDKLD  60
DAEGDAESEK LSLSQSIDNP SDKPDAPPCK LRSEHRKEKS LGLLTQNFVK LFLTMEIETI  120
SLDEAAKRLL GEGHAANNMR TKVRRLYDIA NVLSSLNLIE KTQQADSRKP AFRWLGQAKR  180
NEGVTVALPP TKTLPNKRAF GTDLTNIDNK RGKLDSTMEN RGKPTQDGGN LFNNLQRQLG  240
QENRSDFVYG PFHPAGARKQ EHGNRTVQEK ERKSIQDWEN LASSFRPQYQ NPGLNDLFGH  300
YMEAWRSWYS DLRRDRAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yo2_A2e-18216860228Transcription factor E2F8
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539129.1_FGP010
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1200320.0AK120032.1 Oryza sativa Japonica Group cDNA clone:002-186-D11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643420.10.0E2F transcription factor-like E2FE
TrEMBLA0A0D3GEU50.0A0A0D3GEU5_9ORYZ; Uncharacterized protein
STRINGOBART06G09260.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31853884
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.22e-64DP-E2F-like 1