PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN539127.1_FGP003 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GRAS | ||||||||
Protein Properties | Length: 298aa MW: 31628.1 Da PI: 7.8306 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 202.1 | 3.2e-62 | 2 | 251 | 19 | 274 |
GRAS 19 laqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegee 110 +a +lL+ l+ ++p gd+ qRl+a+++ AL++r+ p+++ ++ s e+ aa +l+++vsP++ ++ aN aIl+av+g++ KN539127.1_FGP003 2 AAASLLSALKLSVNPCGDAEQRLVAMMVAALSSRVGT--------GPSQHLADLYSGEHRAACQLLQDVSPCFGLALHGANLAILDAVAGHR 85 68899******************************98........5666666666899999******************************* PP GRAS 111 rvHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg....skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198 ++H +Dfd+s +Q +aL++aLa+R+ ++ sl++T+v++p+s +++l +t erL+k+A++ g++f+f++ v+ r +++e ++L ++p KN539127.1_FGP003 86 AIHLVDFDVSA-AQHVALIKALADRRVPATSLKVTVVADPTSPftpaMTQSLAATCERLKKLAQQAGIDFRFRA-VSCRAAEIEASKLGCEP 175 *********85.8**************************9988899999*************************.7889************* PP GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274 gEalaVnl++ l r++desvs +++rde+L+ v+ l P+vv++veqe+++n+++ ++rf++a +y a++ds +++ KN539127.1_FGP003 176 GEALAVNLAFTLSRVPDESVSPANPRDELLRRVRALGPRVVTLVEQELNTNTAPMAARFSDASAHYGAVLDSPSTG 251 ************************************************************************8765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 34.626 | 1 | 298 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.1E-59 | 2 | 251 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 298 aa Download sequence Send to blast |
MAAASLLSAL KLSVNPCGDA EQRLVAMMVA ALSSRVGTGP SQHLADLYSG EHRAACQLLQ 60 DVSPCFGLAL HGANLAILDA VAGHRAIHLV DFDVSAAQHV ALIKALADRR VPATSLKVTV 120 VADPTSPFTP AMTQSLAATC ERLKKLAQQA GIDFRFRAVS CRAAEIEASK LGCEPGEALA 180 VNLAFTLSRV PDESVSPANP RDELLRRVRA LGPRVVTLVE QELNTNTAPM AARFSDASAH 240 YGAVLDSPST GKNSLHGAAW STVFRDQCYP ATSALEKGPI RDVSRDKTAT SEWRWHAT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 9e-26 | 3 | 247 | 22 | 268 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN539127.1_FGP003 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK120775 | 0.0 | AK120775.1 Oryza sativa Japonica Group cDNA clone:J023009G09, full insert sequence. | |||
GenBank | AP004178 | 0.0 | AP004178.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1123_G04. | |||
GenBank | AP005823 | 0.0 | AP005823.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0663F07. | |||
GenBank | AP014958 | 0.0 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. | |||
GenBank | AY224426 | 0.0 | AY224426.1 Oryza sativa (japonica cultivar-group) isolate 20145 scarecrow transcriptional regulator-like protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015623156.1 | 1e-168 | scarecrow-like protein 8 | ||||
TrEMBL | A0A0E0NJA0 | 1e-166 | A0A0E0NJA0_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI02G29540.1 | 1e-167 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4188 | 34 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52510.1 | 1e-56 | SCARECROW-like 8 |