PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN539119.1_FGP013 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 271aa MW: 30472.6 Da PI: 7.3087 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 86.7 | 1.4e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien +nrqvtfskRr g+lKKA+EL vLCda+v v+ifsstgk++ey+s KN539119.1_FGP013 9 KRIENATNRQVTFSKRRGGLLKKANELAVLCDARVGVVIFSSTGKMFEYCS 59 79***********************************************96 PP | |||||||
2 | K-box | 60.5 | 6.9e-21 | 72 | 156 | 2 | 85 |
K-box 2 qkssgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkek 85 q+ ++++ e ++ ++ e++++++e+e+L +R++ G+dL++L+l +++ LeqqLe s++k+R++K++ll +q+++l++k + KN539119.1_FGP013 72 QTVTNTHfEEINHDQQIFVEMTRMRNEMEKLDGGIRRFTGDDLSNLTLADINDLEQQLEFSVTKVRARKHQLLNQQLDNLRRKHQ 156 5556666666778899999****************************************************************87 PP | |||||||
3 | K-box | 15.4 | 7.8e-07 | 153 | 185 | 68 | 100 |
K-box 68 kKnellleqieelqkkekelqeenkaLrkklee 100 +K++ll +q+++l++ke+ l+++n L ++++e KN539119.1_FGP013 153 RKHQLLNQQLDNLRRKEHILEDQNSFLCRMINE 185 9**************************998875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.3E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 32.198 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.36E-42 | 2 | 78 | No hit | No description |
SuperFamily | SSF55455 | 2.35E-32 | 2 | 88 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.2E-29 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.8E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.2E-29 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.2E-29 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 6.6E-19 | 81 | 158 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 13.212 | 85 | 189 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008360 | Biological Process | regulation of cell shape | ||||
GO:0019252 | Biological Process | starch biosynthetic process | ||||
GO:0043068 | Biological Process | positive regulation of programmed cell death | ||||
GO:0048316 | Biological Process | seed development | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0080155 | Biological Process | regulation of double fertilization forming a zygote and endosperm | ||||
GO:2000029 | Biological Process | regulation of proanthocyanidin biosynthetic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 271 aa Download sequence Send to blast |
MGRGKIEIKR IENATNRQVT FSKRRGGLLK KANELAVLCD ARVGVVIFSS TGKMFEYCSP 60 TCSLRELIEH YQTVTNTHFE EINHDQQIFV EMTRMRNEME KLDGGIRRFT GDDLSNLTLA 120 DINDLEQQLE FSVTKVRARK HQLLNQQLDN LRRKHQLLNQ QLDNLRRKEH ILEDQNSFLC 180 RMINENHQAA VGGGDVKAMV EMAPVLSMLT AAPAYYGEES SSTALQLTPP LHAVDAAAGF 240 RLQPTQPNLQ DPGCSSSSFH AAAAGHGLQL W |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 4e-18 | 1 | 85 | 1 | 83 | MEF2C |
5f28_B | 4e-18 | 1 | 85 | 1 | 83 | MEF2C |
5f28_C | 4e-18 | 1 | 85 | 1 | 83 | MEF2C |
5f28_D | 4e-18 | 1 | 85 | 1 | 83 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN539119.1_FGP013 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK109522 | 0.0 | AK109522.1 Oryza sativa Japonica Group cDNA clone:002-115-F04, full insert sequence. | |||
GenBank | DQ004266 | 0.0 | DQ004266.1 Oryza sativa (japonica cultivar-group) FST (FST) mRNA, complete cds. | |||
GenBank | FJ750933 | 0.0 | FJ750933.1 Oryza sativa clone KCS006F06 MADS-box transcription factor 29 mRNA, complete cds. | |||
GenBank | JX025003 | 0.0 | JX025003.1 Oryza sativa Japonica Group MADS-domain transcription factor variant b (FST) mRNA, complete cds, alternatively spliced. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015624837.1 | 1e-176 | MADS-box transcription factor 29 isoform X1 | ||||
Refseq | XP_025879036.1 | 1e-176 | MADS-box transcription factor 29 isoform X1 | ||||
Swissprot | Q6H711 | 1e-177 | MAD29_ORYSJ; MADS-box transcription factor 29 | ||||
TrEMBL | A0A0E0CGD4 | 0.0 | A0A0E0CGD4_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI02G06200.1 | 0.0 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1850 | 37 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23260.2 | 5e-42 | MIKC_MADS family protein |