PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN539119.1_FGP007 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NF-YC | ||||||||
Protein Properties | Length: 259aa MW: 28819.4 Da PI: 4.6278 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 178.3 | 7.3e-56 | 83 | 187 | 1 | 102 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdif 89 ql+ fw++q ie++tdfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdi+ KN539119.1_FGP007 83 QLREFWANQmeeIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFAKACEVFILELTLRSWMHTEENKRRTLQKNDIAAAITRTDIY 174 89******9777789***************************************************************************** PP NF-YC 90 dflvdivprdelk 102 dflvdivprde+k KN539119.1_FGP007 175 DFLVDIVPRDEMK 187 **********975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 6.2E-34 | 57 | 177 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 2.1E-37 | 97 | 169 | IPR009072 | Histone-fold |
Pfam | PF00808 | 5.3E-21 | 105 | 168 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MEPSSQPQPV MGVATGGSQA YPPPASAYPP QAMVPGAPAV VPPGSQPSAP FPTNPAQLSA 60 QHQLVYQQAQ QFHQQLQQQQ QQQLREFWAN QMEEIEQTTD FKNHSLPLAR IKKIMKADED 120 VRMISAEAPV VFAKACEVFI LELTLRSWMH TEENKRRTLQ KNDIAAAITR TDIYDFLVDI 180 VPRDEMKEEG LGLPRVGLPP NVGGAADTYP YYYVPAQQGP ASGMMYGGQQ GHPVTYVWQQ 240 PQEQQEEAPE EQHSLPESS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 1e-59 | 91 | 183 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 155 | 161 | RRTLQKN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of flowering time under long day (LD) conditions. Functions as repressor of flowering, independently of HD1 and GHD7. Controls flowering time by negatively regulating the expression of EHD1 and HD3A (PubMed:26542958). Component of the NF-Y/HAP transcription factor complex (By similarity). {ECO:0000250, ECO:0000269|PubMed:26542958}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN539119.1_FGP007 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation under long day (LD) conditions. Expression increases in the middle of daytime, peaks around the end of the light period and gradually decreases during the dark period and beginning of daylight. {ECO:0000269|PubMed:26542958}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB288041 | 0.0 | AB288041.1 Oryza sativa Japonica Group OsHAP5A gene for HAP5 subunit of HAP complex, complete cds. | |||
GenBank | AK243429 | 0.0 | AK243429.1 Oryza sativa Japonica Group cDNA, clone: J100067L16, full insert sequence. | |||
GenBank | AP004113 | 0.0 | AP004113.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1116_A06. | |||
GenBank | AP004836 | 0.0 | AP004836.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0030G02. | |||
GenBank | AP014958 | 0.0 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012610 | 0.0 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. | |||
GenBank | HQ162683 | 0.0 | HQ162683.1 Oryza sativa Japonica Group nuclear transcription factor Y subunit gamma mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015627520.1 | 0.0 | nuclear transcription factor Y subunit C-4-like | ||||
Refseq | XP_015627522.1 | 0.0 | nuclear transcription factor Y subunit C-4-like | ||||
Swissprot | Q655V5 | 1e-126 | NFYC4_ORYSJ; Nuclear transcription factor Y subunit C-4 | ||||
TrEMBL | A0A0D3F1A7 | 0.0 | A0A0D3F1A7_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0D9YMY1 | 0.0 | A0A0D9YMY1_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0G206 | 0.0 | A0A0E0G206_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0NAH2 | 0.0 | A0A0E0NAH2_ORYRU; Uncharacterized protein | ||||
TrEMBL | A2X1E4 | 0.0 | A2X1E4_ORYSI; Uncharacterized protein | ||||
TrEMBL | I1NXP3 | 0.0 | I1NXP3_ORYGL; Uncharacterized protein | ||||
TrEMBL | Q6H707 | 0.0 | Q6H707_ORYSJ; HAP5 subunit of HAP complex | ||||
STRING | OGLUM02G05270.1 | 0.0 | (Oryza glumipatula) | ||||
STRING | ORUFI02G05530.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | OS02T0170500-01 | 0.0 | (Oryza sativa) | ||||
STRING | ONIVA02G05730.1 | 0.0 | (Oryza nivara) | ||||
STRING | ORGLA02G0049900.1 | 0.0 | (Oryza glaberrima) | ||||
STRING | OBART02G05400.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2703 | 37 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56170.2 | 4e-74 | nuclear factor Y, subunit C2 |
Publications ? help Back to Top | |||
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