PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539106.1_FGP005
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 676aa    MW: 74595 Da    PI: 6.2732
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539106.1_FGP005genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM93.33.9e-29872282128
                NAM   2 ppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra........ 77 
                        p G++F+P+d e++ e+L++k++  +      ++ +   +++v +i++++P++Lp  +k + ++ +fF++ +++y +g+rk+r+        
  KN539106.1_FGP005  87 PDGVKFDPSDLEVL-EHLERKINLGNpgpqglIDHFIPtLEKVeGICYTHPENLP-GIKLDGTSSHFFHRISNAYGSGQRKRRKishtghaa 176
                        88**********99.99****998887887774444444888878**********.66778899*******************767766665 PP

                NAM  78 .tksgyWkatgkdkevlskkgelvglkktLvfykg.rapkgektdWvmheyrl 128
                          ++ +W++tgk+k++++ +g l+g kk+Lv+ykg +++k ++++Wvmh+y+l
  KN539106.1_FGP005 177 sDENIRWHKTGKSKQIYH-NGVLKGWKKILVLYKGsKKNKIVQANWVMHQYNL 228
                        544678************.99************996777889*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.05E-3470247IPR003441NAC domain
PROSITE profilePS5100528.47386247IPR003441NAC domain
PfamPF023651.0E-1187228IPR003441NAC domain
PROSITE profilePS513758.912492522IPR002885Pentatricopeptide repeat
PfamPF015356.4E-4495520IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007568.8E-5495519IPR002885Pentatricopeptide repeat
PfamPF130411.0E-16522572IPR002885Pentatricopeptide repeat
PROSITE profilePS5137512.134523557IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.3E-9525559IPR002885Pentatricopeptide repeat
PfamPF130411.4E-16573622IPR002885Pentatricopeptide repeat
PROSITE profilePS5137513.384574608IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.8E-9576609IPR002885Pentatricopeptide repeat
PROSITE profilePS5137513.461609643IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007568.4E-11612644IPR002885Pentatricopeptide repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 676 aa     Download sequence    Send to blast
MARLVTVAAA KVKGSASRFR YVCSTPRTLD QPWIIAGGKV IATKIRNATQ LLSCKLGELV  60
PEAWRECPNC KCHIDNSDVT LQWPEFPDGV KFDPSDLEVL EHLERKINLG NPGPQGLIDH  120
FIPTLEKVEG ICYTHPENLP GIKLDGTSSH FFHRISNAYG SGQRKRRKIS HTGHAASDEN  180
IRWHKTGKSK QIYHNGVLKG WKKILVLYKG SKKNKIVQAN WVMHQYNLGV EEGGEDGELV  240
VSKVFYQLSS KQTGTPEMDS VTEEASDALT IRSDPITPIT NPPLPRCLMN SPCDTEQNGT  300
ISHDQEGECS TSTLRPMVEA GNRAGCSAGA STAGDFDEDL LQRCEFPEDP VPTLDDTLPF  360
LYTDETDLFS WEDFQFGSQE SFGWVDGDHT LVQFLYLCMW DRLLSALSAD KALSPLAVLP  420
HLDGAPSSLP NLLLTASAAV RPHATSLRLY SRMKSLSLPI STASLHPLLS ALPSAPAFAL  480
FADMFRLRLP LCTTTFNIML RHLCSAGKPA RALELLRQMP RPNAVTYNTV IAGFCSRGRV  540
QAALDIMREM RERGGIAPNQ YTYGTVISGW CKPDLVTYNT LISGYSMKGD VKDALRIRNE  600
MMNKGFNPTL LTYNALIQGL CKNGQGDDAE NMVKEMVENG ITPDDSTYIS LIEGLTTEDE  660
RAIDDERLAA ADAAKV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5i9f_A3e-4239665514444pentatricopeptide repeat protein dPPR-U10
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539106.1_FGP005
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6303300.0AB630330.1 Oryza sativa Japonica Group BET1 mRNA for transcription factor, complete cds, cultivar: Wataribune.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006653523.10.0PREDICTED: NAC domain-containing protein 8-like
TrEMBLA0A0E0H2510.0A0A0E0H251_ORYNI; Uncharacterized protein
STRINGONIVA04G14230.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21103799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25580.11e-59NAC family protein