PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539100.1_FGP019
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 763aa    MW: 82003.7 Da    PI: 5.7409
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539100.1_FGP019genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.91.1e-20119174156
                        TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                        +++ +++t++q++++e+lF+++++p+ ++r +L+++lgL+ rqVk+WFqNrR+++k
  KN539100.1_FGP019 119 KKRYHRHTAHQIQQMEALFKECPHPDDKQRLKLSQELGLKPRQVKFWFQNRRTQMK 174
                        688999***********************************************998 PP
2START96.35.6e-3129146072206
                        T-TT-S....EEEEEEEECTT...........................EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEE CS
              START  72 Wdetla....kaetlevissg...........................galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSv 130
                        W   ++    ka t++ i+ g                             + +m+ae q+lsplv+ R++vf Ry+     +g+w+ivd   
  KN539100.1_FGP019 291 WMDLFPsivcKARTIQIINHGaasghlgsgtllllfgdgwgllkcacaWWYMQMQAEVQFLSPLVAaREVVFFRYCVHnADEGSWAIVDFPA 382
                        55555555555555555555555555555555555555555555555556789*************************9999*******555 PP

                        E-TTS--...-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX..HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
              START 131 dseqkppe..sssvvRaellpSgiliepksnghskvtwvehvdlkgrlp..hwllrslvksglaegaktwvatlqrqcek 206
                        +  ++     ++svvR++++pSg++i++++ng+s+v+wveh+++ g     + ++r  v sg+a+ga +w++ lqrqce+
  KN539100.1_FGP019 383 EGFEE--GllQASVVRCRRRPSGCIIQDMPNGYSRVVWVEHMEMVGEEKplQPVFRDYVASGAAFGATRWLSILQRQCER 460
                        55555..356*********************************98765449***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.99E-20103177IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.1E-22106170IPR009057Homeodomain-like
PROSITE profilePS5007117.07116176IPR001356Homeobox domain
SMARTSM003891.1E-19117180IPR001356Homeobox domain
PfamPF000463.1E-18119174IPR001356Homeobox domain
CDDcd000865.41E-19119177No hitNo description
PROSITE patternPS000270151174IPR017970Homeobox, conserved site
SMARTSM002344.3E-6271460IPR002913START domain
PROSITE profilePS5084830.901278463IPR002913START domain
CDDcd088751.00E-66288459No hitNo description
SuperFamilySSF559618.1E-20289313No hitNo description
PfamPF018521.1E-24341460IPR002913START domain
SuperFamilySSF559618.1E-20342462No hitNo description
Gene3DG3DSA:3.30.530.202.8E-4350426IPR023393START-like domain
SuperFamilySSF559611.0E-15485657No hitNo description
SuperFamilySSF559611.0E-15705744No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 763 aa     Download sequence    Send to blast
MAGASSSADA LFASPLIPNP ALAGFMSSSA AMPFHHFSNA AATLIPKEEG LMGGLHVAKD  60
EEMDLEMDME LSGGSGSAHL DGLLSFADVD DDHKPQHSGH DQPPDAAQPS GAAGGNGKKK  120
RYHRHTAHQI QQMEALFKEC PHPDDKQRLK LSQELGLKPR QVKFWFQNRR TQMKAQQDRA  180
DNVILRAENE NLKSDNFRLQ AAIRNVVCPN CGHAAVLADM SYEEQQLRIE NARLKDEAPV  240
MGCGDLIPPP VVPQQMAADG SAAYMGAMMA PVQEQDKQLV VDLAATAANK WMDLFPSIVC  300
KARTIQIINH GAASGHLGSG TLLLLFGDGW GLLKCACAWW YMQMQAEVQF LSPLVAAREV  360
VFFRYCVHNA DEGSWAIVDF PAEGFEEGLL QASVVRCRRR PSGCIIQDMP NGYSRVVWVE  420
HMEMVGEEKP LQPVFRDYVA SGAAFGATRW LSILQRQCER LASELARNIA DLGVIRTPEA  480
RTNMMKLSQR MITTFCANIS ASGTQSWTAL SDSTQDTIRV TTRKNTEPGQ PSGVILTAVS  540
TSWLPFTHQQ VFELLADEQQ RCQLEILSNG GSLHEVAHIA NGSHPRNCIS LLRINAASNS  600
SQNVELLLQE SSTHPDGGSL VVFATVDVDA IQVTMSGEDP SYIPLLPLGF AIFPATSPSP  660
AAAPTISSST TTTTTTGNGN GETSSTPPRN SSSNNNNADE LLPPNGCLLT VGMQVLASAI  720
PSAKLNLSSV TAINSHVCNA IHQITAALKG SAGGAGGEPA SDQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539100.1_FGP019
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1016460.0AB101646.1 Oryza sativa Japonica Group Roc3 mRNA for GL2-type homeodomain protein, complete cds.
GenBankAK0719390.0AK071939.1 Oryza sativa Japonica Group cDNA clone:J013087I01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613461.10.0homeobox-leucine zipper protein ROC3
RefseqXP_025876369.10.0homeobox-leucine zipper protein ROC3
SwissprotA2ZAI70.0ROC3_ORYSI; Homeobox-leucine zipper protein ROC3
TrEMBLR7W9T90.0R7W9T9_AEGTA; Homeobox-leucine zipper protein ROC3
STRINGEMT182680.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78463441
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46880.11e-146homeobox-7