PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539095.1_FGP013
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HSF
Protein Properties Length: 421aa    MW: 47487.2 Da    PI: 5.3605
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539095.1_FGP013genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind96.92e-301849101
                        HHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXX CS
       HSF_DNA-bind   9 iledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrk 100
                        +++d++++ ++ w+  g+sfvv ++ ef +++LpkyFkh+nf+SFvRQLn+YgF+kv+ e+         weF+++ F kg+++ l++i+r+
  KN539095.1_FGP013   1 MVDDPSTDAVVGWTPAGTSFVVANQPEFCRDLLPKYFKHNNFSSFVRQLNTYGFRKVDPEQ---------WEFANEDFIKGQRHRLKNIHRR 83 
                        899******************************************************9998.........*********************9 PP

                        X CS
       HSF_DNA-bind 101 k 101
                        k
  KN539095.1_FGP013  84 K 84 
                        8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.7E-48183IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.8E-32183IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467856.39E-29183IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004475.0E-27183IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-103244IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043403357IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-104557IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0009733Biological Processresponse to auxin
GO:0009958Biological Processpositive gravitropism
GO:0048527Biological Processlateral root development
GO:0048530Biological Processfruit morphogenesis
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MVDDPSTDAV VGWTPAGTSF VVANQPEFCR DLLPKYFKHN NFSSFVRQLN TYGFRKVDPE  60
QWEFANEDFI KGQRHRLKNI HRRKPIFSHS SHSQGAGPLT DNERKDYEEE IERLKSDNAA  120
LSSELQNNTL KKLNMEKRMQ ALEEKLFVVE DQQRSLISYV REIVKAPGFL SSFVQQQDHH  180
RKKRRLPIPI SFHEDANTQE NQIMPCDLTN SPAQTFYRES FGKMESSLNS LENFLREASE  240
EFGNDISYDD GVPGPSSTVV LTELHSPGES DPRVSSPPTR MRTSSAGAGD SHSSRDVAES  300
TSCAESPPIP QMHSRVDTRA KVSEIDVNSE PAVTETGPSR DQPAEEPPAV TPGANDGFWQ  360
QFLTEQPGSS DAHQEAQSER RDGGNKVDEM KSGDRQHLWW GKRNVEQITE KLGHLTSTEK  420
T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-2218327120Heat shock factor protein 1
5d5u_B1e-2218336129Heat shock factor protein 1
5d5v_B1e-2218336129Heat shock factor protein 1
5d5v_D1e-2218336129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539095.1_FGP013
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1098560.0AK109856.1 Oryza sativa Japonica Group cDNA clone:002-148-G05, full insert sequence.
GenBankAY3444910.0AY344491.1 Oryza sativa (japonica cultivar-group) heat shock factor RHSF9 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615651.10.0heat stress transcription factor A-4b
SwissprotQ94J160.0HFA4B_ORYSJ; Heat stress transcription factor A-4b
TrEMBLA0A0D3EU060.0A0A0D3EU06_9ORYZ; Uncharacterized protein
TrEMBLI1NRP20.0I1NRP2_ORYGL; Uncharacterized protein
STRINGORGLA01G0253200.10.0(Oryza glaberrima)
STRINGOBART01G30880.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32963778
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45710.12e-79HSF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Shim D, et al.
    Orthologs of the class A4 heat shock transcription factor HsfA4a confer cadmium tolerance in wheat and rice.
    Plant Cell, 2009. 21(12): p. 4031-43
    [PMID:20028842]
  3. Guan JC, et al.
    A 9 bp cis-element in the promoters of class I small heat shock protein genes on chromosome 3 in rice mediates L-azetidine-2-carboxylic acid and heat shock responses.
    J. Exp. Bot., 2010. 61(15): p. 4249-61
    [PMID:20643810]