PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539093.1_FGP006
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 508aa    MW: 55742.6 Da    PI: 7.3666
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539093.1_FGP006genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.24.6e-30181237259
                        --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         Dg+nWrKYGqK+vk+se++rsYYrCt ++C +kkkve++  d++vvei+Y+g+Hnhe
  KN539093.1_FGP006 181 GDGFNWRKYGQKQVKSSENSRSYYRCTNSNCLAKKKVEHCP-DGRVVEIIYRGTHNHE 237
                        6****************************************.***************8 PP
2WRKY85.83.8e-27348411259
                        --SS-EEEEEEE--TT-SS-......EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefp......rsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        +Dgy+WrKYGqK vkg+++p       sYYrCt+ gCpv+k+ve++ +d + +++tYeg+Hnh+
  KN539093.1_FGP006 348 SDGYRWRKYGQKIVKGNPNPsvydklMSYYRCTHDGCPVRKHVEKAPDDDNNIVVTYEGKHNHD 411
                        7*******************554444499**********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.7E-26174239IPR003657WRKY domain
SuperFamilySSF1182906.67E-24175239IPR003657WRKY domain
PROSITE profilePS5081121.631175239IPR003657WRKY domain
SMARTSM007749.4E-33180238IPR003657WRKY domain
PfamPF031068.8E-23182237IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.4E-27341413IPR003657WRKY domain
PROSITE profilePS5081128.185342413IPR003657WRKY domain
SuperFamilySSF1182901.09E-23342413IPR003657WRKY domain
SMARTSM007744.5E-31347412IPR003657WRKY domain
PfamPF031068.4E-21349411IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MEGKGKGKES MEVEEVGKEK EAKGKESMEV EEGKEGNGKA KEKETKVKVK EEGGEEKEKG  60
KVEVVEAKRR PAGVGAETPI LAVPMVAVPC FLASPAFAGH FSMSHQAALA SVTAQAQIQL  120
QSPTTPYSEG LPSPFPITPK AVMPLQRSPS GTEGSVHRPV LEKSASFQSR PHNHMSVNMV  180
GDGFNWRKYG QKQVKSSENS RSYYRCTNSN CLAKKKVEHC PDGRVVEIIY RGTHNHEPPQ  240
KTRFVKERVA HITASSGDDE TLRLVNNEII ESPSPGCKLE PGAVSEASEQ QLFCSSDCEG  300
DAGNKSEDDH PSTEPQPKRR IIETSTPLTP VLRTVREQKI IVQAGKTSDG YRWRKYGQKI  360
VKGNPNPSVY DKLMSYYRCT HDGCPVRKHV EKAPDDDNNI VVTYEGKHNH DQPFRNNNES  420
KDGPVPMIIP AETTSEQPST MTSTSEQKQP ISLLKDGGDE PMKGKTSEIG GEKAVESAQT  480
LISIKTNPDD MKNTLLKDTS AVVPVQNN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-223494131977Probable WRKY transcription factor 4
2lex_A3e-223494131977Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539093.1_FGP006
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ2981860.0DQ298186.1 Oryza sativa (japonica cultivar-group) WRKY transcription factor 82 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650463.10.0probable WRKY transcription factor 32 isoform X2
TrEMBLA0A0E0AT580.0A0A0E0AT58_9ORYZ; Uncharacterized protein
STRINGOGLUM08G09260.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58203455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.12e-62WRKY DNA-binding protein 4