PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN539091.1_FGP024

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 297aa MW: 32353.4 Da PI: 7.1476

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN539091.1_FGP024	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	26.6	1.3e-08	98	142	8	52
HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 8 rrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 +r NR A r++R++Kka ++ Lee+v L a N++L k+l++ KN539091.1_FGP024 98 KRPSGNRAAVRKYREKKKAHTASLEEEVVHLRALNQQLMKKLQNH 142 55566**********************************999975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	6.2E-13	89	159	No hit	No description
SMART	SM00338	2.8E-8	89	158	IPR004827	Basic-leucine zipper domain
Pfam	PF07716	9.3E-15	93	148	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	9.0E-8	95	142	No hit	No description
CDD	cd14686	8.25E-12	103	150	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0071294	Biological Process	cellular response to zinc ion
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
MDDGDLDFSN PDTFLCPAVG GADPDGSCSM DSYFDDILKD TEHHACTHTH TCNPPVHDLS 60 HTHTCVHVHT KIVSAPSDTP SDAAETAESP TENNASKKRP SGNRAAVRKY REKKKAHTAS 120 LEEEVVHLRA LNQQLMKKLQ NHATLEAEVS RLRCLLVDIR GRIEGEIGAF PYQRPVKNID 180 LVSSVDQGSY LGGAQVMNSC DFRCADQMYC SPGMQVRTMG EDGAVSGQVL GQGACDIASI 240 QCQGAKSGSA KHPVCGVMEH GYYGIPKAVR RCQGVRRPLR LTRKLEEKGQ KQVINPS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporters ZIP3, ZIP4, ZIP5 and ZIP9 during growth in zinc-deficient conditions. ZIP9 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269\|PubMed:20479230, ECO:0000269\|PubMed:26306426}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN539091.1_FGP024

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by zinc deficiency. {ECO:0000269\|PubMed:20479230}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC091774	0.0	AC091774.7 Oryza sativa chromosome 6 BAC OJ1540_H01 genomic sequence, complete sequence.
GenBank	AK071639	0.0	AK071639.1 Oryza sativa Japonica Group cDNA clone:J023099K10, full insert sequence.
GenBank	AK103968	0.0	AK103968.1 Oryza sativa Japonica Group cDNA clone:001-016-A09, full insert sequence.
GenBank	AP003614	0.0	AP003614.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0481E08.
GenBank	AP003769	0.0	AP003769.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0541C02.
GenBank	AP014962	0.0	AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015642505.1	0.0	basic leucine zipper 19
Refseq	XP_015642506.1	0.0	basic leucine zipper 19
Swissprot	Q8VY76	8e-75	BZP19_ARATH; Basic leucine zipper 19
TrEMBL	Q8SB38	0.0	Q8SB38_ORYSA; Putative transcription factor
STRING	OGLUM06G28970.1	0.0	(Oryza glumipatula)
STRING	ORUFI06G29500.1	0.0	(Oryza rufipogon)
STRING	OS06T0716800-01	0.0	(Oryza sativa)
STRING	ORGLA06G0232500.1	0.0	(Oryza glaberrima)
STRING	OBART06G27540.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4175	35	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35040.1	1e-67	bZIP family protein

Publications ? help Back to Top
Azevedo H, et al. Transcriptomic profiling of Arabidopsis gene expression in response to varying micronutrient zinc supply. Genom Data, 2016. 7: p. 256-8 [PMID:26981422] Castro PH, et al. Phylogenetic analysis of F-bZIP transcription factors indicates conservation of the zinc deficiency response across land plants. Sci Rep, 2017. 7(1): p. 3806 [PMID:28630437] Henriques AR,Farias DDR,Costa de Oliveira A Identification and characterization of the bZIP transcription factor involved in zinc homeostasis in cereals. Genet. Mol. Res., 2017. [PMID:28671251] Nazri AZ,Griffin JHC,Peaston KA,Alexander-Webber DGA,Williams LE F-group bZIPs in barley-a role in Zn deficiency. Plant Cell Environ., 2017. 40(11): p. 2754-2770 [PMID:28763829] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]