PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN539086.1_FGP006 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bZIP | ||||||||
Protein Properties | Length: 100aa MW: 11268 Da PI: 11.0404 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 54.7 | 2.2e-17 | 49 | 96 | 4 | 51 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 ++r rr++kNRe+A rsR+RK+a++ +Le++v++L++eNk+L+ + e+ KN539086.1_FGP006 49 DRRKRRMIKNRESAARSRARKQARVNNLETEVEQLKQENKMLRVKYEQ 96 799****************************************76655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 7.2E-9 | 46 | 98 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 1.9E-15 | 48 | 97 | No hit | No description |
PROSITE profile | PS50217 | 11.45 | 48 | 100 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 3.5E-15 | 49 | 96 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14707 | 1.02E-18 | 50 | 97 | No hit | No description |
SuperFamily | SSF57959 | 6.88E-12 | 50 | 97 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 53 | 68 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 100 aa Download sequence Send to blast |
MSPIFSASAS YHQQQHHLPA PAPLDGAILP ARRFGLDMCA AAGVPAAGDR RKRRMIKNRE 60 SAARSRARKQ ARVNNLETEV EQLKQENKML RVKYEQMVVD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for the transition to flowering promoted by FT. {ECO:0000269|PubMed:23543784}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN539086.1_FGP006 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012617 | 1e-130 | CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence. | |||
GenBank | CT835908 | 1e-130 | CT835908.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN083I14, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015611345.1 | 3e-52 | uncharacterized protein LOC9271661 | ||||
Swissprot | Q7PCC6 | 2e-13 | FDP_ARATH; bZIP transcription factor 27 | ||||
TrEMBL | A0A0E0B5W9 | 8e-52 | A0A0E0B5W9_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A2Z3L0 | 1e-51 | A2Z3L0_ORYSI; Uncharacterized protein | ||||
TrEMBL | I1QQV0 | 2e-51 | I1QQV0_ORYGL; Uncharacterized protein | ||||
STRING | OGLUM09G18650.1 | 1e-52 | (Oryza glumipatula) | ||||
STRING | ORGLA09G0142900.1 | 3e-52 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9764 | 30 | 44 |
Publications ? help Back to Top | |||
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