PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539082.1_FGP007
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 651aa    MW: 69232.3 Da    PI: 11.361
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539082.1_FGP007genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.79e-05626648223
                        EETTTTEEESSHHHHHHHHHH.T CS
            zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                        +C+ C+k+F++ + L++H +  H
  KN539082.1_FGP007 626 SCKSCSKTFNSEMALQSHSKAkH 648
                        7*****************88767 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005265.8E-141177IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467851.85E-101391IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150420.6531382IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.101.5E-91784IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005389.3E-61971IPR005818Linker histone H1/H5, domain H15
SMARTSM003840.9689101IPR017956AT hook, DNA-binding motif
SMARTSM003842.3107119IPR017956AT hook, DNA-binding motif
SMARTSM0038448128140IPR017956AT hook, DNA-binding motif
SMARTSM003842.1159171IPR017956AT hook, DNA-binding motif
SMARTSM003841.1179191IPR017956AT hook, DNA-binding motif
SMARTSM003842.1199211IPR017956AT hook, DNA-binding motif
SMARTSM003840.8226238IPR017956AT hook, DNA-binding motif
SMARTSM003841251263IPR017956AT hook, DNA-binding motif
SMARTSM003840.56279291IPR017956AT hook, DNA-binding motif
PRINTSPR009295.9E-11279289IPR017956AT hook, DNA-binding motif
SMARTSM0038420305317IPR017956AT hook, DNA-binding motif
PRINTSPR009301.4E-6355367IPR000116High mobility group protein HMGA
PRINTSPR009295.9E-11379390IPR017956AT hook, DNA-binding motif
SMARTSM003842.9381393IPR017956AT hook, DNA-binding motif
PRINTSPR009301.4E-6383394IPR000116High mobility group protein HMGA
PRINTSPR009301.4E-6398417IPR000116High mobility group protein HMGA
PRINTSPR009295.9E-11407417IPR017956AT hook, DNA-binding motif
SMARTSM003841.2409421IPR017956AT hook, DNA-binding motif
PROSITE profilePS5015710.408625651IPR007087Zinc finger, C2H2
PROSITE patternPS000280627648IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0009294Biological ProcessDNA mediated transformation
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010162Biological Processseed dormancy process
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0000786Cellular Componentnucleosome
GO:0005618Cellular Componentcell wall
GO:0005730Cellular Componentnucleolus
GO:0005739Cellular Componentmitochondrion
GO:0005774Cellular Componentvacuolar membrane
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 651 aa     Download sequence    Send to blast
MHLDASYFSL APDLLDLVQM ILRALKELPD PIISSRRAIA KYISDNFSGL PSHHDALLTV  60
HLRRLRSQGL LLMSGHSYLL STSATAARGR GRGRPPKKAS SSAPPQKRGP GRPRKNTALF  120
PVPVLEAKPG RGRPRKNPLP VASSTSSAAA ATALSLRVKR GPGRPRKNAA ATPLRLGVKR  180
GPGRPRKNAT ATPLSLGVKR GPGRPRKNAA AAAASPVAPP PASPLKRGVG RPRKNATPLV  240
KPGPGRPSGF KRGPGRPRKN ATSPVLSVPP TAAAVLGVKR GRGRPRKDKP LQSWSVLSGG  300
AAMTKRGPGR PRKKRPLEAG GVVAAQVDTA DGGEAGAVQN GGEVRCLLSD GASSMENRGP  360
GSPRKEVLLE NEPTVSTLVG KRGRGRPKKE KPSAARLAET GDAKSMGIKR GRGRPRKDSS  420
FQAVFAEAAG LEVKPGQTVK CEPEDERFLH LSQAALGESK KGSDNAVMYV KTDDQKLVIG  480
TLSADKFPQI QFDLVFDKEF ELSHTSKTAS VFFSGYKMKR RKKRSFQLPG QMDSSEDDSS  540
EDDEDESDEE ETPKKPETGK RKVAEIVLKT PSSDKKAKIA TPSGQKTGDK KGVHVATPHP  600
AKQASKTPVN DKSKEKSPKS GGGSISCKSC SKTFNSEMAL QSHSKAKHPA K
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1408416KRGRGRPRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539082.1_FGP007
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0647980.0AK064798.1 Oryza sativa Japonica Group cDNA clone:J013000D04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015640521.10.0origin recognition complex subunit 4 isoform X1
TrEMBLA0A0D3GBQ20.0A0A0D3GBQ2_9ORYZ; Uncharacterized protein
STRINGOBART05G28300.10.0(Oryza barthii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.22e-23histone deacetylase 3