PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN539080.1_FGP007 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bZIP | ||||||||
Protein Properties | Length: 101aa MW: 11196.9 Da PI: 10.3424 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 40.3 | 6.8e-13 | 41 | 91 | 5 | 55 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 kr++r NR +A rs +RK +i+eLe+kv++L++e ++L +l l+++ KN539080.1_FGP007 41 KRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATTLSAQLALLQDH 91 9******************************************99999875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 2.4E-10 | 37 | 101 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.898 | 39 | 90 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 5.2E-12 | 41 | 91 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 8.4E-13 | 41 | 91 | No hit | No description |
SuperFamily | SSF57959 | 1.13E-12 | 41 | 95 | No hit | No description |
CDD | cd14703 | 5.32E-20 | 42 | 89 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 101 aa Download sequence Send to blast |
MSIKAEELVG ASPGTEGMSS AEAKKAVSAA KLAELALVDP KRAKRIWANR QSAARSKERK 60 MRYIAELERK VQTLQTEATT LSAQLALLQD HFGWFEEIRP V |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269|PubMed:11390974, ECO:0000269|PubMed:12855676, ECO:0000269|PubMed:14704272, ECO:0000269|PubMed:9311985}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN539080.1_FGP007 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF005492 | 1e-140 | AF005492.1 Oryza sativa bZIP transcriptional activator RF2a (rf2a) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015612692.1 | 5e-52 | transcription factor RF2a | ||||
Swissprot | Q69IL4 | 4e-53 | RF2A_ORYSJ; Transcription factor RF2a | ||||
TrEMBL | A0A0E0M3F0 | 9e-51 | A0A0E0M3F0_ORYPU; Uncharacterized protein | ||||
TrEMBL | A0A0E0QTU8 | 2e-52 | A0A0E0QTU8_ORYRU; Uncharacterized protein | ||||
TrEMBL | Q0J0D1 | 8e-51 | Q0J0D1_ORYSJ; Os09g0516200 protein | ||||
STRING | ORUFI09G17730.1 | 4e-53 | (Oryza rufipogon) | ||||
STRING | OPUNC09G14870.1 | 2e-51 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4269 | 38 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06070.1 | 1e-15 | bZIP family protein |
Publications ? help Back to Top | |||
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