PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN539079.1_FGP004 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | WRKY | ||||||||
Protein Properties | Length: 126aa MW: 14784.2 Da PI: 11.6326 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 33.8 | 7e-11 | 106 | 126 | 2 | 22 |
--SS-EEEEEEE--TT-SS-E CS WRKY 2 dDgynWrKYGqKevkgsefpr 22 D y+WrKYGqK++kgs++pr KN539079.1_FGP004 106 ADDYSWRKYGQKPIKGSPYPR 126 69******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 3.3E-5 | 87 | 103 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 1.0E-10 | 92 | 126 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 13.092 | 100 | 126 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.35E-8 | 101 | 126 | IPR003657 | WRKY domain |
Pfam | PF03106 | 9.8E-7 | 107 | 126 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 126 aa Download sequence Send to blast |
MPQQHPQPPA GSRLLDAVPL FVVVLLAAHV LALYFWLYNE SLGGKQRRVH RSNRELREQD 60 FTSRKLRLFI IVAEFVFPFV LWKASWRARR RIRVPAISSR NADIPADDYS WRKYGQKPIK 120 GSPYPR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN539079.1_FGP004 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK110587 | 9e-63 | AK110587.1 Oryza sativa Japonica Group cDNA clone:002-168-F03, full insert sequence. | |||
GenBank | AP005514 | 9e-63 | AP005514.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0035A24. | |||
GenBank | AP014958 | 9e-63 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. | |||
GenBank | AY676923 | 9e-63 | AY676923.1 Oryza sativa (indica cultivar-group) transcription factor WRKY42 (WRKY42) mRNA, complete cds. | |||
GenBank | CP012610 | 9e-63 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. | |||
GenBank | KM505045 | 9e-63 | KM505045.1 Oryza sativa Japonica Group WRKY transcription factor (WRKY42) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015624842.1 | 1e-22 | WRKY transcription factor WRKY51-like | ||||
STRING | OGLUM02G16050.1 | 4e-22 | (Oryza glumipatula) | ||||
STRING | ORUFI02G16390.1 | 5e-22 | (Oryza rufipogon) | ||||
STRING | OS02T0462800-01 | 5e-22 | (Oryza sativa) | ||||
STRING | ONIVA08G14000.1 | 4e-22 | (Oryza nivara) | ||||
STRING | ORGLA02G0138400.1 | 4e-22 | (Oryza glaberrima) | ||||
STRING | OBART02G15990.1 | 4e-22 | (Oryza barthii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30590.1 | 2e-18 | WRKY DNA-binding protein 21 |