PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539077.1_FGP003
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 81aa    MW: 9215.82 Da    PI: 8.8903
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539077.1_FGP003genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding292.6e-091442129
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHH CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIar 29
                       +g+WT+eEd++l+ ++k  G g+W++ ++
  KN539077.1_FGP003 14 KGAWTKEEDQRLIAYIKANGEGCWRSLPK 42
                       79**********************99877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-11543IPR009057Homeodomain-like
PROSITE profilePS512949.76967IPR017930Myb domain
SuperFamilySSF466891.72E-7945IPR009057Homeodomain-like
PfamPF002493.9E-71442IPR001005SANT/Myb domain
CDDcd001673.52E-41642No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 81 aa     Download sequence    Send to blast
MGRSPCCEKA HTNKGAWTKE EDQRLIAYIK ANGEGCWRSL PKAADALDWP KMREVRSEWY  60
ILMKVKEVHA VVVVLLVVMG S
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate. {ECO:0000269|PubMed:11080161}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539077.1_FGP003
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by exposure to UV-B light. {ECO:0000269|PubMed:11080161}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1340449e-68AC134044.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0019D06 map S10616A, complete sequence.
GenBankAC1357949e-68AC135794.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBb0084H09, complete sequence.
GenBankAP0149679e-68AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
GenBankCP0126199e-68CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615594.19e-26myb-related protein 308
RefseqXP_015697509.17e-26PREDICTED: myb-related protein 308
SwissprotQ9SZP12e-25MYB4_ARATH; Transcription repressor MYB4
TrEMBLA0A0A0K4N01e-24A0A0A0K4N0_CUCSA; MYB domain class transcription factor
TrEMBLJ3N6H22e-24J3N6H2_ORYBR; Uncharacterized protein
STRINGOS11T0180900-003e-25(Oryza sativa)
STRINGOB11G14080.13e-25(Oryza brachyantha)
STRINGOPUNC11G04750.13e-25(Oryza punctata)
STRINGLPERR11G04310.14e-25(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.12e-26myb domain protein 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Schenke D,Cai D,Scheel D
    Suppression of UV-B stress responses by flg22 is regulated at the chromatin level via histone modification.
    Plant Cell Environ., 2014. 37(7): p. 1716-21
    [PMID:24450952]
  3. Zhou M, et al.
    Changing a conserved amino acid in R2R3-MYB transcription repressors results in cytoplasmic accumulation and abolishes their repressive activity in Arabidopsis.
    Plant J., 2015. 84(2): p. 395-403
    [PMID:26332741]
  4. Zhang J, et al.
    Soybean SPX1 is an important component of the response to phosphate deficiency for phosphorus homeostasis.
    Plant Sci., 2016. 248: p. 82-91
    [PMID:27181950]
  5. Zhou M, et al.
    LNK1 and LNK2 Corepressors Interact with the MYB3 Transcription Factor in Phenylpropanoid Biosynthesis.
    Plant Physiol., 2017. 174(3): p. 1348-1358
    [PMID:28483877]
  6. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]
  7. Verma N,Burma PK
    Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum.
    Plant J., 2017. 92(3): p. 481-494
    [PMID:28849604]