PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN539077.1_FGP003 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB_related | ||||||||
Protein Properties | Length: 81aa MW: 9215.82 Da PI: 8.8903 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29 | 2.6e-09 | 14 | 42 | 1 | 29 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIar 29 +g+WT+eEd++l+ ++k G g+W++ ++ KN539077.1_FGP003 14 KGAWTKEEDQRLIAYIKANGEGCWRSLPK 42 79**********************99877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-11 | 5 | 43 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 9.76 | 9 | 67 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.72E-7 | 9 | 45 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.9E-7 | 14 | 42 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.52E-4 | 16 | 42 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 81 aa Download sequence Send to blast |
MGRSPCCEKA HTNKGAWTKE EDQRLIAYIK ANGEGCWRSL PKAADALDWP KMREVRSEWY 60 ILMKVKEVHA VVVVLLVVMG S |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate. {ECO:0000269|PubMed:11080161}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN539077.1_FGP003 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by exposure to UV-B light. {ECO:0000269|PubMed:11080161}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC134044 | 9e-68 | AC134044.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0019D06 map S10616A, complete sequence. | |||
GenBank | AC135794 | 9e-68 | AC135794.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBb0084H09, complete sequence. | |||
GenBank | AP014967 | 9e-68 | AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012619 | 9e-68 | CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015615594.1 | 9e-26 | myb-related protein 308 | ||||
Refseq | XP_015697509.1 | 7e-26 | PREDICTED: myb-related protein 308 | ||||
Swissprot | Q9SZP1 | 2e-25 | MYB4_ARATH; Transcription repressor MYB4 | ||||
TrEMBL | A0A0A0K4N0 | 1e-24 | A0A0A0K4N0_CUCSA; MYB domain class transcription factor | ||||
TrEMBL | J3N6H2 | 2e-24 | J3N6H2_ORYBR; Uncharacterized protein | ||||
STRING | OS11T0180900-00 | 3e-25 | (Oryza sativa) | ||||
STRING | OB11G14080.1 | 3e-25 | (Oryza brachyantha) | ||||
STRING | OPUNC11G04750.1 | 3e-25 | (Oryza punctata) | ||||
STRING | LPERR11G04310.1 | 4e-25 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP116 | 37 | 448 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38620.1 | 2e-26 | myb domain protein 4 |