PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539072.1_FGP005
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 424aa    MW: 47123.6 Da    PI: 6.7653
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539072.1_FGP005genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.84.1e-11965155
                AP2  1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55
                       s y+GV+ ++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  KN539072.1_FGP005  9 SIYRGVTKHRWTGRYEAHLWDnSCR-RegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 65
                       57*******************4444.2455535555.779999**************98 PP
2AP251.72.1e-16108159155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        s y+GV+++++ grW A+I  +     +k  +lg+fgt eeAa+a++ a+ k++g
  KN539072.1_FGP005 108 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFGTQEEAAEAYDIAAIKFRG 159
                        57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.42E-18975No hitNo description
PfamPF008471.8E-8965IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-15975IPR016177DNA-binding domain
SMARTSM003805.7E-231079IPR001471AP2/ERF domain
PROSITE profilePS5103217.1221073IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-111074IPR001471AP2/ERF domain
PRINTSPR003671.6E-61122IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-18108169IPR016177DNA-binding domain
PfamPF008472.7E-11108159IPR001471AP2/ERF domain
CDDcd000182.25E-24108169No hitNo description
SMARTSM003806.0E-33109173IPR001471AP2/ERF domain
PROSITE profilePS5103218.834109167IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.3E-18109168IPR001471AP2/ERF domain
PRINTSPR003671.6E-6149169IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MDTFGQRTSI YRGVTKHRWT GRYEAHLWDN SCRREGQTRK GRQGGYDKEE KAARAYDLAA  60
LKYWGTTTTT NFPVSNYEKE LDEMKHMNRQ EFVASLRRKS SGFSRGASIY RGVTRHHQHG  120
RWQARIGRVA GNKDLYLGTF GTQEEAAEAY DIAAIKFRGL NAVTNFDMSR YDVKSIIESS  180
NLPIGTGTTR RLKDSSDHTD NVVDINVNTE PNNVVSSHFT NGVGNYGSQH YGYNGWSPIS  240
MQPIPSQYAN GQPRAWLKQE QDSSVVTAAQ NLHNLHHFSS LGYTHNFFQQ SDVPDVTGFV  300
DAPSRSGDSY SFRYNGTNGF HGLPGGISYA MPVATAVDQG QGIHGYGEDG VAGIDTTHDL  360
YGSRNVYYLS EGSLVADVEK EGDYSQSVGG NSWVLPTPES EMVEKADNVT VCHGMPLFSV  420
WNDA
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00610ChIP-seqTransfer from AT5G17430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539072.1_FGP005
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2876210.0AK287621.1 Oryza sativa Japonica Group cDNA, clone: J065066I09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025876947.10.0AP2-like ethylene-responsive transcription factor BBM1
SwissprotQ6PQQ41e-120BBM_ARATH; AP2-like ethylene-responsive transcription factor BBM
TrEMBLA0A0D3HKS20.0A0A0D3HKS2_9ORYZ; Uncharacterized protein
TrEMBLA2ZDJ40.0A2ZDJ4_ORYSI; Uncharacterized protein
STRINGOBART11G10210.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP156937110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.11e-118AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Horstman A,Willemsen V,Boutilier K,Heidstra R
    AINTEGUMENTA-LIKE proteins: hubs in a plethora of networks.
    Trends Plant Sci., 2014. 19(3): p. 146-57
    [PMID:24280109]
  3. Horstman A, et al.
    AIL and HDG proteins act antagonistically to control cell proliferation.
    Development, 2015. 142(3): p. 454-64
    [PMID:25564655]
  4. Florez SL,Erwin RL,Maximova SN,Guiltinan MJ,Curtis WR
    Enhanced somatic embryogenesis in Theobroma cacao using the homologous BABY BOOM transcription factor.
    BMC Plant Biol., 2015. 15: p. 121
    [PMID:25976599]
  5. Lutz KA,Martin C,Khairzada S,Maliga P
    Steroid-inducible BABY BOOM system for development of fertile Arabidopsis thaliana plants after prolonged tissue culture.
    Plant Cell Rep., 2015. 34(10): p. 1849-56
    [PMID:26156330]
  6. Horstman A, et al.
    The BABY BOOM Transcription Factor Activates the LEC1-ABI3-FUS3-LEC2 Network to Induce Somatic Embryogenesis.
    Plant Physiol., 2017. 175(2): p. 848-857
    [PMID:28830937]
  7. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]
  8. Horstman A,Bemer M,Boutilier K
    A transcriptional view on somatic embryogenesis.
    Regeneration (Oxf), 2017. 4(4): p. 201-216
    [PMID:29299323]