PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN539060.1_FGP003

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 439aa MW: 49021.2 Da PI: 4.5744

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN539060.1_FGP003	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	23.1	1.3e-07	335	360	4	29
HHHHHHHHHHHHHHHHHHHHHCTSCC CS HLH 4 ahnerErrRRdriNsafeeLrellPk 29 +h ErrRR+++N++f Lr+l+P KN539060.1_FGP003 335 NHVLKERRRREKLNEKFIILRSLVPF 360 79999********************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	3.0E-12	9	52	IPR025610	Transcription factor MYC/MYB N-terminal
PROSITE profile	PS50888	9.89	331	399	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.22E-8	332	365	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.7E-5	335	360	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.87E-8	335	368	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.8E-7	335	362	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 439 aa Download sequence Send to blast
MWCISNNQTD EWQSAGIQTV VCIPVVDGVL EIGTTEKVEE DMGLIQYARG IFMDQHGIHM 60 KPTLSQHSTS NPVTHCIHQH PIQVQMQLGI TSQTKFDYSD ELNADEENDD TEEEGMSGSD 120 TNNTDTERNS GQLQLQMQDQ LNMVSNDHQT MPNNAVSSEI MQCEMSEVVR DGCSNNILED 180 EIQMLMDCQN SNCQFNLQGP DEPCHSWHFL CEELQNDYQP ATEDQVASPE NTHYPKTLMT 240 ILHYNTLRQQ EMNIKNYLPV SEKSSFSRWT TPEGSDDNKT MISPGTTQRM LKSILMIVPS 300 SHCSYRGAET PESRGGKGAS GTRKVGAIQG DFSANHVLKE RRRREKLNEK FIILRSLVPF 360 MTKVSIIESD ALLELRCGCG GGGGSGAVLL RVMQAMQELQ LEVTGVQASC AGGELLAELR 420 AKVVVTILIC MKMQMQMQN

Sequence ? help Back to Top

Protein Sequence Length: 439 aa Download sequence Send to blast

MWCISNNQTD EWQSAGIQTV VCIPVVDGVL EIGTTEKVEE DMGLIQYARG IFMDQHGIHM  60
KPTLSQHSTS NPVTHCIHQH PIQVQMQLGI TSQTKFDYSD ELNADEENDD TEEEGMSGSD  120
TNNTDTERNS GQLQLQMQDQ LNMVSNDHQT MPNNAVSSEI MQCEMSEVVR DGCSNNILED  180
EIQMLMDCQN SNCQFNLQGP DEPCHSWHFL CEELQNDYQP ATEDQVASPE NTHYPKTLMT  240
ILHYNTLRQQ EMNIKNYLPV SEKSSFSRWT TPEGSDDNKT MISPGTTQRM LKSILMIVPS  300
SHCSYRGAET PESRGGKGAS GTRKVGAIQG DFSANHVLKE RRRREKLNEK FIILRSLVPF  360
MTKVSIIESD ALLELRCGCG GGGGSGAVLL RVMQAMQELQ LEVTGVQASC AGGELLAELR  420
AKVVVTILIC MKMQMQMQN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	339	344	ERRRRE
2	340	345	RRRREK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN539060.1_FGP003

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JF303061	0.0	JF303061.1 Oryza sativa Indica Group SD7-1D bHLH transcription factor (SD7-1/Rc) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015646360.2	0.0	LOW QUALITY PROTEIN: basic helix-loop-helix protein A-like
TrEMBL	A0A2Z2C7J2	0.0	A0A2Z2C7J2_ORYSA; Rc protein
STRING	OBART07G07130.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8863	30	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09820.1	1e-13	bHLH family protein