PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539052.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HB-other
Protein Properties Length: 307aa    MW: 33783 Da    PI: 9.8426
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539052.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox33.56.9e-11851221954
                        HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
           Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                        Fe   ++yp+ ++++ LAk++gLt +qV++WF N R +
  KN539052.1_FGP001  85 FEHflHPYPTDSDKQMLAKQTGLTRNQVSNWFINARVR 122
                        664459******************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007112.45563126IPR001356Homeobox domain
SMARTSM003891.4E-1166130IPR001356Homeobox domain
CDDcd000863.37E-1466127No hitNo description
SuperFamilySSF466891.67E-1768133IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.9E-2969130IPR009057Homeodomain-like
PfamPF059202.2E-1983122IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MALRTMSKHF KYLKGIILNQ LRNTGKGATK DGLGKEDTAN FGLMGGGAGL LRGNNVNSFS  60
QPHNIWRPQR GLPERAVSVL RAWLFEHFLH PYPTDSDKQM LAKQTGLTRN QVSNWFINAR  120
VRLWKPMVEE IHNLEMRQLQ KNPSLDKNQL SMQHTQHSSD SSGKPCDPSN SLQGQSSSMT  180
RNHSVSASRH IEDGLSQMPH DISGQVSFAY NGLAAHHSIA MAHHHQPDLI GTGGAANAGG  240
VSLTLGLHQN NNRAYIAEPL PAALPLNLAH RFGLEDVSDA YVMSSFGGQD RHFTKEIGGH  300
LLHDFVG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A2e-1772130563Homeobox protein Meis2
3k2a_B2e-1772130563Homeobox protein Meis2
4xrs_A1e-1772129158Homeobox protein Meis1
4xrs_B1e-1772129158Homeobox protein Meis1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539052.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1009160.0AK100916.1 Oryza sativa Japonica Group cDNA clone:J023133E06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637721.10.0BEL1-like homeodomain protein 9
TrEMBLA0A0D3G8H00.0A0A0D3G8H0_9ORYZ; Uncharacterized protein
STRINGOBART05G18940.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25283881
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27990.11e-45BEL1-like homeodomain 8