PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN539051.1_FGP010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 75aa MW: 8522.9 Da PI: 10.7014 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 98.4 | 2.9e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien + rqvtfskRrng+lKKA+ELSvLCdaeva+i+fs++gklye++s KN539051.1_FGP010 9 KRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGKLYEFAS 59 79***********************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 9.8E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.595 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.1E-32 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.58E-30 | 3 | 63 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 4.21E-39 | 3 | 59 | No hit | No description |
Pfam | PF00319 | 1.9E-28 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.1E-32 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.1E-32 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 75 aa Download sequence Send to blast |
MVRGKTQMKR IENPTSRQVT FSKRRNGLLK KAFELSVLCD AEVALIVFSP RGKLYEFASA 60 RGFTIIPDKF NDDGQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3mu6_A | 1e-18 | 3 | 60 | 2 | 59 | Myocyte-specific enhancer factor 2A |
3mu6_B | 1e-18 | 3 | 60 | 2 | 59 | Myocyte-specific enhancer factor 2A |
3mu6_C | 1e-18 | 3 | 60 | 2 | 59 | Myocyte-specific enhancer factor 2A |
3mu6_D | 1e-18 | 3 | 60 | 2 | 59 | Myocyte-specific enhancer factor 2A |
5f28_A | 1e-18 | 1 | 60 | 1 | 60 | MEF2C |
5f28_B | 1e-18 | 1 | 60 | 1 | 60 | MEF2C |
5f28_C | 1e-18 | 1 | 60 | 1 | 60 | MEF2C |
5f28_D | 1e-18 | 1 | 60 | 1 | 60 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor active in flowering time control. May control internode elongation and promote floral transition phase. May act upstream of the floral regulators MADS1, MADS14, MADS15 and MADS18 in the floral induction pathway. {ECO:0000269|PubMed:15144377, ECO:0000269|PubMed:17166135}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN539051.1_FGP010 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC098695 | 1e-97 | AC098695.2 Oryza sativa Japonica Group chromosome 3 clone OJ1126B12, complete sequence. | |||
GenBank | AC210475 | 1e-97 | AC210475.1 Oryza glaberrima clone OG_BBa0054O06, complete sequence. | |||
GenBank | AP014959 | 1e-97 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. | |||
GenBank | AY551915 | 1e-97 | AY551915.1 Oryza sativa (japonica cultivar-group) MADS-box protein RMADS210 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006649298.1 | 1e-35 | PREDICTED: MADS-box transcription factor 50-like | ||||
Refseq | XP_007134936.1 | 7e-36 | hypothetical protein PHAVU_010G088100g | ||||
Refseq | XP_007134937.1 | 7e-36 | hypothetical protein PHAVU_010G088100g | ||||
Refseq | XP_015630979.1 | 1e-35 | MADS-box transcription factor 50 | ||||
Refseq | XP_015691000.1 | 1e-35 | PREDICTED: MADS-box transcription factor 50-like | ||||
Refseq | XP_015691001.1 | 1e-35 | PREDICTED: MADS-box transcription factor 50-like | ||||
Refseq | XP_018820265.1 | 7e-36 | PREDICTED: agamous-like MADS-box protein AGL19 isoform X1 | ||||
Refseq | XP_025880188.1 | 1e-35 | MADS-box transcription factor 50 | ||||
Swissprot | Q9XJ60 | 1e-36 | MAD50_ORYSJ; MADS-box transcription factor 50 | ||||
TrEMBL | Q6Q9I7 | 3e-36 | Q6Q9I7_ORYSJ; MADS-box protein RMADS210 | ||||
STRING | OBART03G01800.1 | 1e-36 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP129 | 38 | 398 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45660.1 | 1e-36 | AGAMOUS-like 20 |