PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN539047.1_FGP007 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | Nin-like | ||||||||
Protein Properties | Length: 842aa MW: 92901.1 Da PI: 6.5751 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 90.8 | 1.1e-28 | 495 | 546 | 1 | 52 |
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isl++l++yFs+++k+AAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ KN539047.1_FGP007 495 AEKTISLDVLQQYFSGSLKNAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 546 589***********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.541 | 485 | 566 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 5.7E-26 | 498 | 546 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 2.45E-21 | 738 | 833 | No hit | No description |
SMART | SM00666 | 4.5E-25 | 748 | 830 | IPR000270 | PB1 domain |
Pfam | PF00564 | 1.1E-15 | 748 | 829 | IPR000270 | PB1 domain |
PROSITE profile | PS51745 | 19.116 | 748 | 830 | IPR000270 | PB1 domain |
Gene3D | G3DSA:3.10.20.240 | 3.2E-25 | 748 | 829 | No hit | No description |
CDD | cd06407 | 1.98E-33 | 749 | 829 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0010118 | Biological Process | stomatal movement | ||||
GO:0010167 | Biological Process | response to nitrate | ||||
GO:0042128 | Biological Process | nitrate assimilation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 842 aa Download sequence Send to blast |
MDRNSDTTSK RVDQINSKWQ FHLSIDDNTD SSCLFKERLT QALRYFKEST DQHLLVQVWA 60 PVKSGDRYVL TTSGQPFVLD QQSIGLLQYR AVSMMYMFSV DGENAGELGL PGRVYKQKVP 120 EWTPNVQYYS STEYPRLNHA ISYNVHGTVA LPVFDPSVQN CIAVVELIMT SKKINYAGEV 180 DKVCKALEAV NLKSTEILDH PNVQICNEGR QSALVEILEI LTVVCEEHKL PLAQTWVPCK 240 YRSVLAHGGG VKKSCLSFDG SCMGEVCMST SDVAFHVIDA HMWGFRDACV EHHLQKGQGV 300 SGKAFIYRRP CFSKDISQFC KLEYPLVHYA RMFGLAGCFA ICLQSMYTGD DDYILEFFLP 360 PNCRNEDDQN ALLESILARM KKCLRTLKVV GNGDTNGVCL QISNVLIIET EDLKTNLHFE 420 NSEGCFRESP ESNGSQRAHE VDNDGNKVSI MSERHLLADD NSQNNGASVG RPNGSGASDS 480 LHKSNKPPER RRGKAEKTIS LDVLQQYFSG SLKNAAKSLG VCPTTMKRIC RQHGISRWPS 540 RKINKVNRSL SKLKQVIESV QGSDAAFNLT SITGPLPIPV GPSSDSQNLE KASPNKVAEL 600 SNLAVEGDRD SSLQKPIEND GNLAILMSQQ GFIDANNNLQ LEADKASHSR SSSGEGSINS 660 RTSEASCQGS PANQTFVCKP IASTFAEPQL IPEAFTKEPF QEPALPLSRM LIEDSGSSKD 720 LKNLFTSAVD QPFLARSSNL ALMQNSGTVT IKASFKEDIV RFRFPCSGSV TALKDEVAKR 780 LRMDVGIFDI KYLDDDHEWV KLACNADLEE CMEISRHSGS HVIRLLVSDV AAHLGSSCGS 840 SG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00449 | DAP | Transfer from AT4G24020 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN539047.1_FGP007 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK067319 | 0.0 | AK067319.1 Oryza sativa Japonica Group cDNA clone:J013106K21, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015613020.1 | 0.0 | protein NLP3 | ||||
Swissprot | Q5NB82 | 0.0 | NLP3_ORYSJ; Protein NLP3 | ||||
TrEMBL | A0A0D9Y5S9 | 0.0 | A0A0D9Y5S9_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM01G09910.1 | 0.0 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4778 | 36 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24020.1 | 0.0 | NIN like protein 7 |