PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN539046.1_FGP017 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB_related | ||||||||
Protein Properties | Length: 245aa MW: 27500 Da PI: 4.3833 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.3 | 4.7e-15 | 55 | 98 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+WT +Ed+ lv++++ +G g+W++ ar g Rt++++k++w++ KN539046.1_FGP017 55 RGPWTVDEDLTLVNYIADHGEGRWNSLARAAG--RTDNEIKNYWRT 98 89*****************************8..**********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.761 | 50 | 104 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.0E-18 | 51 | 106 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.16E-13 | 51 | 105 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.9E-12 | 54 | 102 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.5E-13 | 55 | 98 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.20E-11 | 57 | 98 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MAASQRSRST AAQLDVDDQA AADQLMTMMR RPAAALQDEA AAEEEAADLQ LELRRGPWTV 60 DEDLTLVNYI ADHGEGRWNS LARAAGRTDN EIKNYWRTRV QKHAKQLNCD ANSARFKDAM 120 RYLWMPRLAD ASQLGDHHGY NGTTAMGDAH GMPVMTSSSS DSFATSESYD GGLYANVQDN 180 EMVNGGDYYW MQGANQGFCS NYESEQQLHP HEHSQFQDPD LVGWVQGFSE GISENFWSLE 240 DIWKM |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in the jasmonate-dependent defense responses to the rice blast fungus Magnaporthe oryzae. Does not seem to function in the salicylic acid-dependent signaling pathway. {ECO:0000269|PubMed:11310740}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN539046.1_FGP017 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by jasmonate (JA), wounding and infection by the fungal pathogen Magnaporthe oryzae. {ECO:0000269|PubMed:11310740}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL928753 | 0.0 | AL928753.3 Oryza sativa chromosome 12, . BAC OSJNBb0076G11 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. | |||
GenBank | AP014968 | 0.0 | AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence. | |||
GenBank | CU406184 | 0.0 | CU406184.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C108M20, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015618854.1 | 1e-152 | transcription factor JAMYB-like | ||||
Swissprot | Q2QZJ8 | 3e-57 | JAMYB_ORYSJ; Transcription factor JAMYB | ||||
TrEMBL | I1R796 | 1e-153 | I1R796_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA12G0140200.1 | 1e-154 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP198 | 38 | 330 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49620.1 | 2e-34 | myb domain protein 78 |
Publications ? help Back to Top | |||
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