PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN539044.1_FGP009 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | WRKY | ||||||||
Protein Properties | Length: 195aa MW: 20832.7 Da PI: 7.7679 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 31.4 | 3.7e-10 | 167 | 187 | 1 | 21 |
---SS-EEEEEEE--TT-SS- CS WRKY 1 ldDgynWrKYGqKevkgsefp 21 ldDgy+WrKYGqK+vk+s +p KN539044.1_FGP009 167 LDDGYKWRKYGQKVVKNSLHP 187 59****************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 8.5E-12 | 152 | 187 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.71E-9 | 159 | 187 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 11.968 | 162 | 187 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.8E-6 | 168 | 187 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MEGSQLETAC LPAALYAPLC PYTPPSPPSF LAPLPSLQHK LPQLPQLVHD HAAAAAGTNH 60 GVMFSSDHGC LYPLLPGIPF CLDSGCGAAA CDDDKPAGFA HLGSAEADTS AAAAARVDSE 120 IVAAATATTC HGPNSWWKGT EKGKMKVRRK MREPRFCFQT RSDVDVLDDG YKWRKYGQKV 180 VKNSLHPSLS GVRFN |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN539044.1_FGP009 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT831946 | 0.0 | CT831946.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN037J04, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015635033.1 | 1e-118 | probable WRKY transcription factor 12 | ||||
TrEMBL | A0A0D9ZNT3 | 1e-119 | A0A0D9ZNT3_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0H3T8 | 1e-118 | A0A0E0H3T8_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0PC91 | 1e-118 | A0A0E0PC91_ORYRU; Uncharacterized protein | ||||
TrEMBL | B8ASM9 | 1e-118 | B8ASM9_ORYSI; Uncharacterized protein | ||||
TrEMBL | Q01J25 | 1e-118 | Q01J25_ORYSA; OSIGBa0101C23.2 protein | ||||
STRING | OGLUM04G20470.1 | 1e-119 | (Oryza glumipatula) | ||||
STRING | ORUFI04G22110.1 | 1e-119 | (Oryza rufipogon) | ||||
STRING | ONIVA04G18780.1 | 1e-119 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1138 | 38 | 130 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44745.1 | 3e-28 | WRKY family protein |