PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN539042.1_FGP002 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB_related | ||||||||
Protein Properties | Length: 57aa MW: 6328.37 Da PI: 8.3312 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 36 | 1.7e-11 | 14 | 50 | 1 | 36 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS- CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRt 36 +g+WT++Ed+llvd+v+ G+g+W++ ++ +R+ KN539042.1_FGP002 14 KGPWTPDEDKLLVDYVQANGSGNWRLLPKLAVcANRS 50 79************************99988766666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.5E-12 | 5 | 51 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 10.771 | 9 | 57 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.3E-10 | 9 | 54 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 6.2E-10 | 14 | 51 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.03E-5 | 16 | 42 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 57 aa Download sequence Send to blast |
MGRTPCCDSK VLKKGPWTPD EDKLLVDYVQ ANGSGNWRLL PKLAVCANRS AFLCFVD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN539042.1_FGP002 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL663006 | 6e-68 | AL663006.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0039L24, complete sequence. | |||
GenBank | AP014960 | 6e-68 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012612 | 6e-68 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015636233.1 | 2e-24 | transcription factor MYB41 | ||||
Swissprot | Q9S9Z2 | 4e-17 | MYB93_ARATH; Transcription factor MYB93 | ||||
TrEMBL | A0A0E0H3J0 | 7e-23 | A0A0E0H3J0_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0PBZ3 | 7e-23 | A0A0E0PBZ3_ORYRU; Uncharacterized protein | ||||
TrEMBL | A2XVU9 | 4e-23 | A2XVU9_ORYSI; Uncharacterized protein | ||||
TrEMBL | A3AVV6 | 5e-23 | A3AVV6_ORYSJ; Uncharacterized protein | ||||
TrEMBL | I1PNC1 | 5e-23 | I1PNC1_ORYGL; Uncharacterized protein | ||||
TrEMBL | Q7XMK6 | 5e-23 | Q7XMK6_ORYSJ; OSJNBb0039L24.12 protein | ||||
STRING | OMERI04G16050.1 | 2e-25 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5409 | 31 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34670.1 | 2e-19 | myb domain protein 93 |
Publications ? help Back to Top | |||
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