PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539038.1_FGP009
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 551aa    MW: 61930.3 Da    PI: 7.2875
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539038.1_FGP009genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.14.6e-211671156
                       TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                       r++ +++t+ q+++Le++F+++++p++++r++L+++lgL+ rq+k+WFqNrR+++k
  KN539038.1_FGP009 16 RKRYHRHTPRQIQQLEAMFKECPHPDENQRAQLSRELGLEPRQIKFWFQNRRTQMK 71
                       688899***********************************************998 PP
2START157.79.3e-501493792206
                        HHHHHHHHHHHHHHHC-TT-EEEE..........EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S CS
              START   2 laeeaaqelvkkalaeepgWvkss..........esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla 77 
                        +a +a++el+++a+a++  W+ks+          e +n d++ ++f++ ++       ++e +r+sg+v m ++ l   ++d++ +W e ++
  KN539038.1_FGP009 149 MATRAMDELIRLAQAGDHIWSKSPgggvsggdarETLNVDTYDSIFSKPGGsyrapsINVEGSRESGLVLMSAVALADVFMDTN-KWMEFFP 239
                        5789*****************************999**********887779****99****************9999999999.******* PP

                        ....EEEEEEEECTT.....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECT CS
              START  78 ....kaetlevissg.....galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksn 159
                            ka t++v+ +g     + l lm+ el  ++p+vp R++ fvRy+rq ++g w+i+dvSvd +++    ++  R+++lpSg+li +++n
  KN539038.1_FGP009 240 sivsKAHTIDVLVNGmggrsESLILMYEELHIMTPAVPtREVNFVRYCRQIEQGLWAIADVSVDLQRDAHFGAPPPRSRRLPSGCLIADMAN 331
                        ********************************************************************98899******************* PP

                        CEEEEEEEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
              START 160 ghskvtwvehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206
                        g+skvtwveh+++++++p   l+r lv sg+a+ga +w+a+lqr ce+
  KN539038.1_FGP009 332 GYSKVTWVEHMEVEEKSPiNVLYRDLVLSGAAFGAHRWLAALQRACER 379
                        ******************999*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.3E-20976IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-221078IPR009057Homeodomain-like
PROSITE profilePS5007118.2041373IPR001356Homeobox domain
SMARTSM003894.8E-201477IPR001356Homeobox domain
CDDcd000862.45E-191574No hitNo description
PfamPF000461.3E-181671IPR001356Homeobox domain
PROSITE patternPS0002704871IPR017970Homeobox, conserved site
PROSITE profilePS5084845.309139382IPR002913START domain
SuperFamilySSF559613.3E-31140381No hitNo description
CDDcd088752.39E-112143378No hitNo description
SMARTSM002341.5E-35148379IPR002913START domain
PfamPF018525.0E-42149379IPR002913START domain
SuperFamilySSF559611.14E-11430545No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 551 aa     Download sequence    Send to blast
MDFGDEPEGS DSQRRRKRYH RHTPRQIQQL EAMFKECPHP DENQRAQLSR ELGLEPRQIK  60
FWFQNRRTQM KAQHERADNC FLRAENDKIR CENIAIREAL KNVICPTCGG PPVGEDYFDE  120
QKLRMENARL KEELPAPVSD MERPMMAEMA TRAMDELIRL AQAGDHIWSK SPGGGVSGGD  180
ARETLNVDTY DSIFSKPGGS YRAPSINVEG SRESGLVLMS AVALADVFMD TNKWMEFFPS  240
IVSKAHTIDV LVNGMGGRSE SLILMYEELH IMTPAVPTRE VNFVRYCRQI EQGLWAIADV  300
SVDLQRDAHF GAPPPRSRRL PSGCLIADMA NGYSKVTWVE HMEVEEKSPI NVLYRDLVLS  360
GAAFGAHRWL AALQRACERY ASLVALGVPH HIAGGMHTRR ALDITVVAFF SRHDTDIVRD  420
RRGWAWHAVT PEGKRSMMKL SQRMVSSFCS SLGASQMHQW TTLSGSNEVS VRVTMHRSTD  480
PGQPNGVVLS AATSIWLPVP CDHVFAFVRD ENTRSQWDVL SHGNQVQEVS RIPNGSNPGN  540
CISLLRVISP N
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539038.1_FGP009
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0047580.0AP004758.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0664C05.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642098.10.0homeobox-leucine zipper protein ROC8
SwissprotQ69T580.0ROC8_ORYSJ; Homeobox-leucine zipper protein ROC8
TrEMBLB9FS370.0B9FS37_ORYSJ; Uncharacterized protein
STRINGOPUNC06G06470.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29123770
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.11e-153homeodomain GLABROUS 11