PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539034.1_FGP012
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MIKC_MADS
Protein Properties Length: 243aa    MW: 28363.7 Da    PI: 8.3906
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539034.1_FGP012genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF80.31.3e-25959151
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                       k+ien +n qvtfskRr g+lKKA+EL +LCda++ vi+fs tgk+yeyss
  KN539034.1_FGP012  9 KKIENPTNLQVTFSKRRMGLLKKANELAILCDAQIGVIVFSGTGKMYEYSS 59
                       68***********************************************96 PP
2K-box56.41.3e-19851571485
              K-box  14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnelll.eqieelqkkek 85 
                        +++  qe++++k+e++ L+   R+++G+dL sL+l++  +Leqq+e sl k+R +K++ ll +q+ e++++e 
  KN539034.1_FGP012  85 QQRIIQEMTRMKDENNRLRIIMRQYMGDDLASLTLQDVSNLEQQIEFSLYKVRLRKQQQLLdQQLLEMRNREM 157
                        67889************************************************99987555167889999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.969161IPR002100Transcription factor, MADS-box
SMARTSM004322.0E-37160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.22E-28279IPR002100Transcription factor, MADS-box
CDDcd002654.50E-38276No hitNo description
PRINTSPR004041.0E-26323IPR002100Transcription factor, MADS-box
PfamPF003195.0E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-263859IPR002100Transcription factor, MADS-box
PfamPF014863.1E-1681157IPR002487Transcription factor, K-box
PROSITE profilePS5129712.66285176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MGRGRVELKK IENPTNLQVT FSKRRMGLLK KANELAILCD AQIGVIVFSG TGKMYEYSSP  60
PWRIANIFDR YLKAPSTRFE EMDVQQRIIQ EMTRMKDENN RLRIIMRQYM GDDLASLTLQ  120
DVSNLEQQIE FSLYKVRLRK QQQLLDQQLL EMRNREMPIP GDQSNYLFHM NLIGEQAQAP  180
PMVNPKPFPL WDVGGSSQMY NQDAESSMTA LQLSPQLHEY KLQPLQPNLQ EEANLHGYVL  240
RLW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-15160160MEF2C
5f28_B1e-15160160MEF2C
5f28_C1e-15160160MEF2C
5f28_D1e-15160160MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539034.1_FGP012
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1776980.0AY177698.1 Oryza sativa (japonica cultivar-group) transcription factor MADS31 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635703.11e-161MADS-box transcription factor 31 isoform X3
RefseqXP_015635704.11e-161MADS-box transcription factor 31 isoform X3
RefseqXP_015635705.11e-161MADS-box transcription factor 31 isoform X3
RefseqXP_025880955.11e-161MADS-box transcription factor 31 isoform X3
RefseqXP_025880956.11e-161MADS-box transcription factor 31 isoform X3
SwissprotQ84NC26e-98MAD31_ORYSJ; MADS-box transcription factor 31
TrEMBLA0A0E0DIA91e-160A0A0E0DIA9_9ORYZ; Uncharacterized protein
STRINGOPUNC04G22650.21e-161(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP185037100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.34e-39MIKC_MADS family protein
Publications ? help Back to Top
  1. Schilling S, et al.
    Non-canonical structure, function and phylogeny of the Bsister MADS-box gene OsMADS30 of rice (Oryza sativa).
    Plant J., 2015. 84(6): p. 1059-72
    [PMID:26473514]