PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN539024.1_FGP002 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NF-YC | ||||||||
Protein Properties | Length: 249aa MW: 28254.9 Da PI: 4.4045 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 149.5 | 6.9e-47 | 78 | 181 | 1 | 101 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdif 89 ql++fw++q +e++t+fk +lPlarikki+kadedvkmi+ eaP+l++kace+fil++tlrsw h+ee +rrtl++sd++a++++ dif KN539024.1_FGP002 78 QLQAFWADQmaeVEQMTEFKLPNLPLARIKKIMKADEDVKMIAGEAPALFAKACEMFILDMTLRSWQHTEEGRRRTLQRSDVEAVIKKIDIF 169 89******9777799***************************************************************************** PP NF-YC 90 dflvdivprdel 101 dflvdi+ +++ KN539024.1_FGP002 170 DFLVDIITDEQM 181 ******998865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 2.51E-29 | 58 | 172 | IPR009072 | Histone-fold |
Pfam | PF00808 | 7.0E-19 | 100 | 162 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 1.9E-32 | 101 | 176 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MDPHSHKKAN EGLIGDNPDA YAMTTYQPVL MVEPSAAAAF PPAPQVAPAY PVNPMELPEH 60 QQHAIQQVQQ LQQQQKEQLQ AFWADQMAEV EQMTEFKLPN LPLARIKKIM KADEDVKMIA 120 GEAPALFAKA CEMFILDMTL RSWQHTEEGR RRTLQRSDVE AVIKKIDIFD FLVDIITDEQ 180 MKDDGMGSQA ASMVSPYTSG GMGFSFDLYP NQHHLAYMWP PQEQQEQWPP LEQQEQKQKQ 240 DSDGGGQDE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 1e-41 | 86 | 176 | 3 | 93 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 150 | 156 | RRTLQRS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of flowering time under long day (LD) conditions. Functions as repressor of flowering, independently of HD1 and GHD7. Controls flowering time by negatively regulating the expression of EHD1 and HD3A (PubMed:26542958). Component of the NF-Y/HAP transcription factor complex (By similarity). {ECO:0000250, ECO:0000269|PubMed:26542958}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN539024.1_FGP002 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation under long day (LD) conditions. Expression increases in the middle of daytime, peaks around the end of the light period and gradually decreases during the dark period and beginning of daylight. {ECO:0000269|PubMed:26542958}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB288046 | 0.0 | AB288046.1 Oryza sativa Japonica Group OsHAP5F gene for HAP5 subunit of HAP complex, complete cds. | |||
GenBank | AP003875 | 0.0 | AP003875.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OJ1119_C05. | |||
GenBank | AP014964 | 0.0 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015649457.1 | 1e-128 | nuclear transcription factor Y subunit C-4-like | ||||
Swissprot | Q655V5 | 3e-55 | NFYC4_ORYSJ; Nuclear transcription factor Y subunit C-4 | ||||
TrEMBL | A3BQM6 | 1e-127 | A3BQM6_ORYSJ; Uncharacterized protein | ||||
STRING | OMERI08G06040.1 | 1e-127 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP16977 | 11 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56170.2 | 1e-49 | nuclear factor Y, subunit C2 |
Publications ? help Back to Top | |||
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